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  Home > SCOP hierarchy > Fibronectin type III > Hidden Markov models

Fibronectin type III superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 111 SUPERFAMILY models representing the Fibronectin type III superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034836 176 2005-09-08 d1a21a1 Fibronectin type III
0036944 91 2005-09-08 d1eerb1 Fibronectin type III
0038102 19 2005-09-08 d1gh7a1 Fibronectin type III
0042595 4421 2005-09-08 d1q38a_ Fibronectin type III
0045838 281 2008-09-10 d1axib1 Fibronectin type III
0046819 13783 2008-09-10 d1fnfa1 Fibronectin type III
0047532 610 2008-09-10 d1j7vr1 Fibronectin type III
0049605 18640 2008-09-10 d1tena_ Fibronectin type III
0050484 17736 2008-09-10 d1wf5a1 Fibronectin type III
0050785 15871 2008-09-10 d1x3da1 Fibronectin type III
0050829 10126 2008-09-10 d1x5ia1 Fibronectin type III
0051918 3931 2008-09-10 d2b5ib2 Fibronectin type III
0052314 7792 2008-09-10 d2cuma1 Fibronectin type III
0053184 8289 2008-09-10 d2mfna1 Fibronectin type III
0035671 2645 2005-09-08 d1bqua2 Fibronectin type III
0037682 5126 2005-09-08 d1fnha2 Fibronectin type III
0041200 27 2005-09-08 d1n26a2 Fibronectin type III
0045312 284 2005-09-08 d2hfta1 Fibronectin type III
0046555 1566 2008-09-10 d1egja_ Fibronectin type III
0047287 12 2008-09-10 d1i1ra1 Fibronectin type III
0049023 17849 2008-09-10 d1qr4a1 Fibronectin type III
0049925 4858 2008-09-10 d1ujta_ Fibronectin type III
0050597 8657 2008-09-10 d1wisa1 Fibronectin type III
0050826 7085 2008-09-10 d1x5fa1 Fibronectin type III
0050843 19088 2008-09-10 d1x5ya1 Fibronectin type III
0052283 4692 2008-09-10 d2cspa1 Fibronectin type III
0052997 7068 2008-09-10 d2haza1 Fibronectin type III
0053851 537 2010-05-31 d2dtge3 Fibronectin type III
0035650 3561 2005-09-08 d1bp3b1 Fibronectin type III
0037415 584 2005-09-08 d1f6fb1 Fibronectin type III
0039415 6 2005-09-08 d1j7vr2 Fibronectin type III
0043952 5024 2005-09-08 d1tdqa1 Fibronectin type III
0046131 7791 2008-09-10 d1cfba1 Fibronectin type III
0046822 7670 2008-09-10 d1fnha1 Fibronectin type III
0048290 20 2008-09-10 d1n6va2 Fibronectin type III
0049874 8850 2008-09-10 d1uema_ Fibronectin type III
0050500 8999 2008-09-10 d1wfoa1 Fibronectin type III
0050819 16023 2008-09-10 d1x4ya1 Fibronectin type III
0050831 6493 2008-09-10 d1x5ka1 Fibronectin type III
0051920 156 2008-09-10 d2b5ic2 Fibronectin type III
0052411 157 2008-09-10 d2d9qb3 Fibronectin type III
0053765 126 2010-05-31 d2c4fu1 Fibronectin type III
0035922 652 2005-09-08 d1cd9b2 Fibronectin type III
0037851 1137 2005-09-08 d1fyhb1 Fibronectin type III
0041236 240 2005-09-08 d1n6va1 Fibronectin type III
0045698 153 2008-09-10 d1a21a2 Fibronectin type III
0046817 21998 2008-09-10 d1fnaa_ Fibronectin type III
0047337 5797 2008-09-10 d1iarb2 Fibronectin type III
0049599 7107 2008-09-10 d1tdqa2 Fibronectin type III
0050115 17004 2008-09-10 d1va9a1 Fibronectin type III
0050634 8400 2008-09-10 d1wk0a_ Fibronectin type III
0050828 8405 2008-09-10 d1x5ha1 Fibronectin type III
0051917 23 2008-09-10 d2b5ib1 Fibronectin type III
0052311 2645 2008-09-10 d2cuia1 Fibronectin type III
0053090 11894 2008-09-10 d2ic2a1 Fibronectin type III
0035670 591 2005-09-08 d1bqua1 Fibronectin type III
0037679 4768 2005-09-08 d1fnfa2 Fibronectin type III
0040701 3770 2005-09-08 d1lwra_ Fibronectin type III
0045282 5743 2005-09-08 d2fnba_ Fibronectin type III
0046532 3844 2008-09-10 d1eerb2 Fibronectin type III
0046984 870 2008-09-10 d1gh7a2 Fibronectin type III
0048948 8440 2008-09-10 d1qg3a2 Fibronectin type III
0049877 8415 2008-09-10 d1ueya_ Fibronectin type III
0050506 7829 2008-09-10 d1wfua_ Fibronectin type III
0050825 5990 2008-09-10 d1x5aa1 Fibronectin type III
0050842 20270 2008-09-10 d1x5xa1 Fibronectin type III
0052266 20369 2008-09-10 d2crza1 Fibronectin type III
0052473 7448 2008-09-10 d2dn7a1 Fibronectin type III
0053850 3187 2010-05-31 d2dtge2 Fibronectin type III
0035255 3856 2005-09-08 d1axib2 Fibronectin type III
0037380 1161 2005-09-08 d1f42a3 Fibronectin type III
0038104 63 2005-09-08 d1gh7a3 Fibronectin type III
0042755 1793 2005-09-08 d1qg3a1 Fibronectin type III
0045991 8180 2008-09-10 d1bpva_ Fibronectin type III
0046820 18471 2008-09-10 d1fnfa3 Fibronectin type III
0047536 18733 2008-09-10 d1j8ka_ Fibronectin type III
0049856 4365 2008-09-10 d1uc6a_ Fibronectin type III
0050499 10453 2008-09-10 d1wfna1 Fibronectin type III
0050818 8712 2008-09-10 d1x4xa1 Fibronectin type III
0050830 6460 2008-09-10 d1x5ja1 Fibronectin type III
0051919 5065 2008-09-10 d2b5ic1 Fibronectin type III
0052410 1718 2008-09-10 d2d9qb2 Fibronectin type III
0053185 21789 2008-09-10 d2mfna2 Fibronectin type III
0035921 421 2005-09-08 d1cd9b1 Fibronectin type III
0037683 5791 2005-09-08 d1fnha3 Fibronectin type III
0041201 3250 2005-09-08 d1n26a3 Fibronectin type III
0045313 229 2005-09-08 d2hfta2 Fibronectin type III
0046701 74 2008-09-10 d1f42a2 Fibronectin type III
0047336 42 2008-09-10 d1iarb1 Fibronectin type III
0049024 7749 2008-09-10 d1qr4a2 Fibronectin type III
0050052 8770 2008-09-10 d1v5ja_ Fibronectin type III
0050606 2326 2008-09-10 d1wj3a_ Fibronectin type III
0050827 4298 2008-09-10 d1x5ga1 Fibronectin type III
0050844 21175 2008-09-10 d1x5za1 Fibronectin type III
0052310 8012 2008-09-10 d2cuha1 Fibronectin type III
0053083 14465 2008-09-10 d2ibga1 Fibronectin type III
0054903 13775 2010-05-31 d3csba1 Fibronectin type III
0035651 3569 2005-09-08 d1bp3b2 Fibronectin type III
0037416 3810 2005-09-08 d1f6fb2 Fibronectin type III
0039951 6026 2005-09-08 d1k85a_ Fibronectin type III
0043954 6701 2005-09-08 d1tdqa3 Fibronectin type III
0046132 8042 2008-09-10 d1cfba2 Fibronectin type III
0046886 58 2008-09-10 d1fyhb2 Fibronectin type III
0048655 16945 2008-09-10 d1owwa_ Fibronectin type III
0049875 8988 2008-09-10 d1uena_ Fibronectin type III
0050505 7363 2008-09-10 d1wfta_ Fibronectin type III
0050820 6666 2008-09-10 d1x4za1 Fibronectin type III
0050832 21572 2008-09-10 d1x5la1 Fibronectin type III
0052262 17995 2008-09-10 d2crma1 Fibronectin type III
0052453 19753 2008-09-10 d2djsa1 Fibronectin type III
0053849 8521 2010-05-31 d2dtge1 Fibronectin type III


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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