SUPERFAMILY 1.75 HMM library and genome assignments server

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Cadherin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Cadherin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047927 7779 2008-09-10 d1l3wa2 Cadherin
0041310 5235 2005-09-08 d1ncja2 Cadherin
0048502 14797 2008-09-10 d1o6sb_ Cadherin
0047929 5681 2008-09-10 d1l3wa4 Cadherin
0047926 16619 2008-09-10 d1l3wa1 Cadherin
0036919 6852 2005-09-08 d1edha2 Cadherin
0048328 18016 2008-09-10 d1ncia_ Cadherin
0047928 20684 2008-09-10 d1l3wa3 Cadherin
0046524 14686 2008-09-10 d1edha1 Cadherin
0048618 1459 2008-09-10 d1op4a_ Cadherin
0047930 4854 2008-09-10 d1l3wa5 Cadherin
0049774 560 2008-09-10 d1u2ca1 Dystroglycan, N-terminal domain