SUPERFAMILY 1.75 HMM library and genome assignments server

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Clathrin adaptor appendage domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Clathrin adaptor appendage domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050393 155 2008-09-10 d1w80a1 Alpha-adaptin ear subdomain-like
0046453 162 2008-09-10 d1e42a1 Alpha-adaptin ear subdomain-like
0049038 153 2008-09-10 d1qtsa1 Alpha-adaptin ear subdomain-like
0047086 298 2008-09-10 d1gywb_ gamma-adaptin C-terminal appendage domain-like
0048311 286 2008-09-10 d1na8a_ gamma-adaptin C-terminal appendage domain-like
0042154 316 2005-09-08 d1p4ua_ gamma-adaptin C-terminal appendage domain-like
0048848 168 2008-09-10 d1pzda1 Coatomer appendage domain
0049103 167 2008-09-10 d1r4xa1 Coatomer appendage domain