SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Invasin/intimin cell-adhesion fragments superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Invasin/intimin cell-adhesion fragments superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046227 34 2008-09-10 d1cwva2 Invasin/intimin cell-adhesion fragments
0046663 1485 2008-09-10 d1f00i1 Invasin/intimin cell-adhesion fragments
0046226 14 2008-09-10 d1cwva1 Invasin/intimin cell-adhesion fragments
0046228 1129 2008-09-10 d1cwva3 Invasin/intimin cell-adhesion fragments
0036180 27 2005-09-08 d1cwva4 Invasin/intimin cell-adhesion fragments
0046664 892 2008-09-10 d1f00i2 Invasin/intimin cell-adhesion fragments