SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Carbohydrate-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 16 SUPERFAMILY models representing the Carbohydrate-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046648 395 2008-09-10 d1exha_ Cellulose-binding domain family II
0047180 251 2008-09-10 d1hejc_ Cellulose-binding domain family II
0046464 301 2008-09-10 d1e5ca_ Cellulose-binding domain family II
0051999 76 2008-09-10 d2bm3a1 Cellulose-binding domain family III
0046898 194 2008-09-10 d1g1ka_ Cellulose-binding domain family III
0037927 65 2005-09-08 d1g43a_ Cellulose-binding domain family III
0054439 112 2010-05-31 d2ozna1 Cellulose-binding domain family III
0043980 70 2005-09-08 d1tf4a2 Cellulose-binding domain family III
0049741 80 2008-09-10 d1tyja1 Cellulose-binding domain family III
0041294 85 2005-09-08 d1nbca_ Cellulose-binding domain family III
0035131 102 2005-09-08 d1aoha_ Cellulose-binding domain family III
0052146 177 2008-09-10 d2ccla1 Cellulose-binding domain family III
0043055 104 2005-09-08 d1qzna_ Cellulose-binding domain family III
0037981 78 2005-09-08 d1g87a2 Cellulose-binding domain family III
0054727 12 2010-05-31 d2vo8a1 Cellulose-binding domain family III
0042696 27 2005-09-08 d1qbaa2 Bacterial chitobiase, n-terminal domain