SUPERFAMILY 1.75 HMM library and genome assignments server

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Starch-binding domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 15 SUPERFAMILY models representing the Starch-binding domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042222 146 2005-09-08 d1pama2 Starch-binding domain
0036120 136 2005-09-08 d1cqya_ Starch-binding domain
0047883 644 2008-09-10 d1kula_ Starch-binding domain
0036255 147 2005-09-08 d1d3ca2 Starch-binding domain
0036004 142 2005-09-08 d1ciua2 Starch-binding domain
0042793 138 2005-09-08 d1qhoa2 Starch-binding domain
0036196 148 2005-09-08 d1cyga2 Starch-binding domain
0035978 131 2005-09-08 d1cgta2 Starch-binding domain
0048380 756 2008-09-10 d1nkga1 Rhamnogalacturonase B, RhgB, middle domain
0054194 145 2010-05-31 d2j44a2 PUD-like
0054191 142 2010-05-31 d2j43a1 PUD-like
0054193 195 2010-05-31 d2j44a1 PUD-like
0053916 122 2010-05-31 d2fhfa3 PUD-like
0054200 199 2010-05-31 d2j73a1 PUD-like
0054192 168 2010-05-31 d2j43a2 PUD-like