SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Cupredoxins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 93 SUPERFAMILY models representing the Cupredoxins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046106 8854 2008-09-10 d1cc3a_ Plastocyanin/azurin-like
0047645 231 2008-09-10 d1joia_ Plastocyanin/azurin-like
0048457 229 2008-09-10 d1nwpa_ Plastocyanin/azurin-like
0035035 505 2005-09-08 d1ag6a_ Plastocyanin/azurin-like
0036726 534 2005-09-08 d1e30a_ Plastocyanin/azurin-like
0042368 421 2005-09-08 d1plca_ Plastocyanin/azurin-like
0045174 103 2005-09-08 d2azua_ Plastocyanin/azurin-like
0049086 248 2008-09-10 d1r1ca_ Plastocyanin/azurin-like
0035665 294 2005-09-08 d1bqka_ Plastocyanin/azurin-like
0039509 537 2005-09-08 d1jera_ Plastocyanin/azurin-like
0045671 628 2005-09-08 d9pcya_ Plastocyanin/azurin-like
0048739 1153 2008-09-10 d1pcsa_ Plastocyanin/azurin-like
0046038 3586 2008-09-10 d1bxua_ Plastocyanin/azurin-like
0047347 1064 2008-09-10 d1id2a_ Plastocyanin/azurin-like
0053372 912 2008-09-10 d7pcya_ Plastocyanin/azurin-like
0036161 68 2005-09-08 d1cuoa_ Plastocyanin/azurin-like
0040037 341 2005-09-08 d1kdja_ Plastocyanin/azurin-like
0042227 229 2005-09-08 d1paza_ Plastocyanin/azurin-like
0045766 1270 2008-09-10 d1adwa_ Plastocyanin/azurin-like
0048788 1300 2008-09-10 d1pmya_ Plastocyanin/azurin-like
0050694 464 2008-09-10 d1ws8a_ Plastocyanin/azurin-like
0035275 107 2005-09-08 d1azca_ Plastocyanin/azurin-like
0039214 334 2005-09-08 d1iuza_ Plastocyanin/azurin-like
0045417 627 2005-09-08 d2plta_ Plastocyanin/azurin-like
0046427 261 2008-09-10 d1dyza_ Plastocyanin/azurin-like
0052176 934 2008-09-10 d2cj3a1 Plastocyanin/azurin-like
0037391 502 2005-09-08 d1f56a_ Plastocyanin/azurin-like
0042796 765 2005-09-08 d1qhqa_ Plastocyanin/azurin-like
0045210 520 2005-09-08 d2cbpa_ Plastocyanin/azurin-like
0045919 3266 2008-09-10 d1bawa_ Plastocyanin/azurin-like
0049194 141 2008-09-10 d1rkra_ Plastocyanin/azurin-like
0051890 2141 2008-09-10 d2b3ia_ Plastocyanin/azurin-like
0035783 403 2005-09-08 d1bypa_ Plastocyanin/azurin-like
0048779 981 2008-09-10 d1plba_ Plastocyanin/azurin-like
0049379 1524 2008-09-10 d1sfda_ Plastocyanin/azurin-like
0035179 1573 2005-09-08 d1ar1b1 Periplasmic domain of cytochrome c oxidase subunit II
0045393 1652 2005-09-08 d2occb1 Periplasmic domain of cytochrome c oxidase subunit II
0048089 2386 2008-09-10 d1m56b1 Periplasmic domain of cytochrome c oxidase subunit II
0037557 1433 2005-09-08 d1fftb1 Periplasmic domain of cytochrome c oxidase subunit II
0045236 1620 2005-09-08 d2cuab_ Periplasmic domain of cytochrome c oxidase subunit II
0040322 1547 2005-09-08 d1kyaa3 Multidomain cupredoxins
0049365 2399 2008-09-10 d1sdda2 Multidomain cupredoxins
0052067 2293 2008-09-10 d2bw4a2 Multidomain cupredoxins
0038300 1474 2005-09-08 d1gw0a3 Multidomain cupredoxins
0040278 446 2005-09-08 d1kv7a2 Multidomain cupredoxins
0045803 1685 2008-09-10 d1aoza2 Multidomain cupredoxins
0047082 1636 2008-09-10 d1gyca2 Multidomain cupredoxins
0053158 3014 2008-09-10 d2j5wa4 Multidomain cupredoxins
0038247 714 2005-09-08 d1gska2 Multidomain cupredoxins
0041162 245 2005-09-08 d1mzya2 Multidomain cupredoxins
0044585 973 2005-09-08 d1v10a2 Multidomain cupredoxins
0046621 3580 2008-09-10 d1et7a1 Multidomain cupredoxins
0047784 2954 2008-09-10 d1kcwa2 Multidomain cupredoxins
0049367 2816 2008-09-10 d1sddb2 Multidomain cupredoxins
0053155 3355 2008-09-10 d2j5wa1 Multidomain cupredoxins
0035148 1502 2005-09-08 d1aoza3 Multidomain cupredoxins
0038328 1379 2005-09-08 d1gyca3 Multidomain cupredoxins
0040321 804 2005-09-08 d1kyaa2 Multidomain cupredoxins
0048337 2801 2008-09-10 d1ndsa2 Multidomain cupredoxins
0049364 3336 2008-09-10 d1sdda1 Multidomain cupredoxins
0052066 6259 2008-09-10 d2bw4a1 Multidomain cupredoxins
0034897 1622 2005-09-08 d1a65a3 Multidomain cupredoxins
0038299 910 2005-09-08 d1gw0a2 Multidomain cupredoxins
0047074 3088 2008-09-10 d1gw0a1 Multidomain cupredoxins
0047888 2421 2008-09-10 d1kv7a3 Multidomain cupredoxins
0053157 688 2008-09-10 d2j5wa3 Multidomain cupredoxins
0038246 1273 2005-09-08 d1gska1 Multidomain cupredoxins
0041161 1330 2005-09-08 d1mzya1 Multidomain cupredoxins
0044584 1512 2005-09-08 d1v10a1 Multidomain cupredoxins
0047780 3670 2008-09-10 d1kbva2 Multidomain cupredoxins
0048546 2644 2008-09-10 d1oe1a2 Multidomain cupredoxins
0049366 210 2008-09-10 d1sddb1 Multidomain cupredoxins
0035146 1531 2005-09-08 d1aoza1 Multidomain cupredoxins
0038326 1340 2005-09-08 d1gyca1 Multidomain cupredoxins
0040320 1448 2005-09-08 d1kyaa1 Multidomain cupredoxins
0048336 3069 2008-09-10 d1ndsa1 Multidomain cupredoxins
0053159 3644 2008-09-10 d2j5wa5 Multidomain cupredoxins
0034896 912 2005-09-08 d1a65a2 Multidomain cupredoxins
0038248 907 2005-09-08 d1gska3 Multidomain cupredoxins
0040014 1665 2005-09-08 d1kbva1 Multidomain cupredoxins
0041325 1899 2005-09-08 d1ndta1 Multidomain cupredoxins
0044586 1552 2005-09-08 d1v10a3 Multidomain cupredoxins
0045721 2759 2008-09-10 d1a65a1 Multidomain cupredoxins
0046622 560 2008-09-10 d1et7a2 Multidomain cupredoxins
0047887 2763 2008-09-10 d1kv7a1 Multidomain cupredoxins
0053156 1186 2008-09-10 d2j5wa2 Multidomain cupredoxins
0037814 1599 2005-09-08 d1fwxa1 Nitrosocyanin
0042880 1818 2005-09-08 d1qnia1 Nitrosocyanin
0047343 4774 2008-09-10 d1ibya_ Nitrosocyanin
0039064 94 2005-09-08 d1ikop_ Ephrin ectodomain
0043618 90 2005-09-08 d1shwa_ Ephrin ectodomain
0044953 29 2005-09-08 d1wdaa2 Peptidylarginine deiminase Pad4, N-terminal domain
0051775 15 2008-09-10 d2ai4.1 SO1698-like