SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Periplasmic chaperone C-domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Periplasmic chaperone C-domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042996 156 2005-09-08 d1quna2 Periplasmic chaperone C-domain
0040381 154 2005-09-08 d1l4ia2 Periplasmic chaperone C-domain
0042925 126 2005-09-08 d1qpxa2 Periplasmic chaperone C-domain
0053785 627 2010-05-31 d2co7b2 Periplasmic chaperone C-domain
0042170 134 2005-09-08 d1p5va2 Periplasmic chaperone C-domain