SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

TRAF domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the TRAF domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052253 1088 2008-09-10 d2cr2a1 MATH domain
0037650 200 2005-09-08 d1flka1 MATH domain
0040442 194 2005-09-08 d1lb6a_ MATH domain
0036213 195 2005-09-08 d1czya1 MATH domain
0039868 170 2005-09-08 d1k2fa_ SIAH, seven in absentia homolog