SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Lipase/lipooxygenase domain (PLAT/LH2 domain) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the Lipase/lipooxygenase domain (PLAT/LH2 domain) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040594 464 2005-09-08 d1loxa2 Lipoxigenase N-terminal domain
0046728 229 2008-09-10 d1f8na2 Lipoxigenase N-terminal domain
0041262 73 2005-09-08 d1n8qa2 Lipoxigenase N-terminal domain
0037174 58 2005-09-08 d1etha1 Colipase-binding domain
0047219 378 2008-09-10 d1hpla1 Colipase-binding domain
0038208 59 2005-09-08 d1gpla1 Colipase-binding domain
0035711 92 2005-09-08 d1bu8a1 Colipase-binding domain
0043325 87 2005-09-08 d1rp1a1 Colipase-binding domain
0041912 154 2005-09-08 d1olpa2 Alpha-toxin, C-terminal domain
0040090 159 2005-09-08 d1khoa2 Alpha-toxin, C-terminal domain
0035891 142 2005-09-08 d1ca1a2 Alpha-toxin, C-terminal domain