SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Galactose-binding domain-like > Hidden Markov models

Galactose-binding domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 65 SUPERFAMILY models representing the Galactose-binding domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050401 392 2008-09-10 d1w8oa2 Galactose-binding domain
0047740 382 2008-09-10 d1k3ia2 Galactose-binding domain
0054621 2197 2010-05-31 d2qqia1 Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0036298 328 2005-09-08 d1d7pm_ Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0043558 359 2005-09-08 d1sddb3 Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0036212 322 2005-09-08 d1czsa_ Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0047789 712 2008-09-10 d1kexa_ Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0043559 336 2005-09-08 d1sddb4 Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
0038886 31 2005-09-08 d1i5pa1 delta-Endotoxin, C-terminal domain
0039559 90 2005-09-08 d1ji6a1 delta-Endotoxin, C-terminal domain
0036483 320 2005-09-08 d1dlca1 delta-Endotoxin, C-terminal domain
0036010 325 2005-09-08 d1ciya1 delta-Endotoxin, C-terminal domain
0041575 126 2005-09-08 d1nuka_ Ephrin receptor ligand binding domain
0053743 297 2010-05-31 d2bbaa1 Ephrin receptor ligand binding domain
0045964 948 2008-09-10 d1bhga2 beta-Galactosidase/glucuronidase, N-terminal domain
0051368 1311 2008-09-10 d1yq2a3 beta-Galactosidase/glucuronidase, N-terminal domain
0036533 368 2005-09-08 d1dp0a3 beta-Galactosidase/glucuronidase, N-terminal domain
0054218 995 2010-05-31 d2je8a4 beta-Galactosidase/glucuronidase, N-terminal domain
0054739 1360 2010-05-31 d2vzsa4 beta-Galactosidase/glucuronidase, N-terminal domain
0046425 183 2008-09-10 d1dyoa_ CBM22
0045051 25 2005-09-08 d1xnaa_ N-terminal domain of xrcc1
0049713 362 2008-09-10 d1tvga_ APC10-like
0038231 137 2005-09-08 d1gqpa_ APC10-like
0039546 135 2005-09-08 d1jhja_ APC10-like
0038168 167 2005-09-08 d1gmma_ Family 6 carbohydrate binding module, CBM6
0044564 154 2005-09-08 d1uy4a_ Family 6 carbohydrate binding module, CBM6
0048542 247 2008-09-10 d1od3a_ Family 6 carbohydrate binding module, CBM6
0050018 252 2008-09-10 d1uxza_ Family 6 carbohydrate binding module, CBM6
0050414 305 2008-09-10 d1w9sa_ Family 6 carbohydrate binding module, CBM6
0038180 3 2005-09-08 d1gnya_ CBM15
0047533 22 2008-09-10 d1j83a_ Family 17 carbohydrate binding module, CBM17
0039760 91 2005-09-08 d1ju3a1 PepX C-terminal domain-like
0040582 30 2005-09-08 d1lnsa2 PepX C-terminal domain-like
0041602 70 2005-09-08 d1nx9a1 PepX C-terminal domain-like
0041041 74 2005-09-08 d1mpxa1 PepX C-terminal domain-like
0047745 14 2008-09-10 d1k42a_ CBM4/9
0047060 90 2008-09-10 d1guia_ CBM4/9
0046230 160 2008-09-10 d1cx1a_ CBM4/9
0047057 180 2008-09-10 d1gu3a_ CBM4/9
0047719 596 2008-09-10 d1k12a_ Fucose binding lectin
0040408 3 2005-09-08 d1l7la_ PA-IL, galactose-binding lectin 1
0038642 7 2005-09-08 d1hn0a2 Chondroitin ABC lyase I, N-terminal domain
0048786 10 2008-09-10 d1pmhx_ Family 27 carbohydrate binding module, CBM27
0048554 19 2008-09-10 d1of4a_ Family 27 carbohydrate binding module, CBM27
0038309 4 2005-09-08 d1gwma_ Family 29 carbohydrate binding module, CBM29
0048711 327 2008-09-10 d1p8ja1 Proprotein convertase P-domain
0042013 189 2005-09-08 d1ot5a1 Proprotein convertase P-domain
0044988 25 2005-09-08 d1wmda1 Proprotein convertase P-domain
0044443 68 2005-09-08 d1umha_ F-box associated region, FBA
0041690 111 2005-09-08 d1o59a2 Allantoicase repeat
0041689 112 2005-09-08 d1o59a1 Allantoicase repeat
0050013 21 2008-09-10 d1uwwa_ Family 28 carbohydrate binding module, CBM28
0050662 48 2008-09-10 d1wmxb_ Family 30 carbohydrate binding module, CBM30 (PKD repeat)
0041433 25 2005-09-08 d1nkga2 Rhamnogalacturonase B, RhgB, C-terminal domain
0051052 233 2008-09-10 d1xoya_ Hypothetical protein AT3g04780/F7O18 27
0049620 221 2008-09-10 d1tg7a3 Beta-galactosidase LacA, domains 4 and 5
0049619 232 2008-09-10 d1tg7a2 Beta-galactosidase LacA, domains 4 and 5
0050331 12 2008-09-10 d1w0na_ Family 36 carbohydrate binding module, CBM36
0053078 91 2008-09-10 d2i74a1 Extended PAW domain
0052854 85 2008-09-10 d2g9ga1 Extended PAW domain
0050025 161 2008-09-10 d1v0aa1 CBM11
0050642 9 2008-09-10 d1wkya1 beta-mannanase CBM
0054314 61 2010-05-31 d2o14a1 YxiM N-terminal domain-like
0054721 69 2010-05-31 d2vnga1 NPCBM-like
0054720 183 2010-05-31 d2vmha1 NPCBM-like


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.