SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Spermadhesin, CUB domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Spermadhesin, CUB domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043807 1707 2005-09-08 d1szba1 Spermadhesin, CUB domain
0043586 1501 2005-09-08 d1sfpa_ Spermadhesin, CUB domain
0041548 1747 2005-09-08 d1nt0a1 Spermadhesin, CUB domain
0043701 1309 2005-09-08 d1sppb_ Spermadhesin, CUB domain
0041645 1574 2005-09-08 d1nzia1 Spermadhesin, CUB domain
0054622 4542 2010-05-31 d2qqma3 Spermadhesin, CUB domain
0043700 1508 2005-09-08 d1sppa_ Spermadhesin, CUB domain
0041549 1776 2005-09-08 d1nt0a2 Spermadhesin, CUB domain