SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

SH3-domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 58 SUPERFAMILY models representing the SH3-domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036794 3159 2005-09-08 d1e6ga_ SH3-domain
0042323 1788 2005-09-08 d1phta_ SH3-domain
0045799 9063 2008-09-10 d1aoja_ SH3-domain
0047008 9543 2008-09-10 d1gl5a_ SH3-domain
0047748 10258 2008-09-10 d1k4us_ SH3-domain
0049700 9688 2008-09-10 d1tuca_ SH3-domain
0049926 10577 2008-09-10 d1ujya_ SH3-domain
0053627 7967 2010-05-31 d1wlpb2 SH3-domain
0041338 3196 2005-09-08 d1nega_ SH3-domain
0044915 787 2005-09-08 d1vyua1 SH3-domain
0046906 3112 2008-09-10 d1g2ba_ SH3-domain
0047642 9943 2008-09-10 d1jo8a_ SH3-domain
0049175 1064 2008-09-10 d1ri9a_ SH3-domain
0049900 9002 2008-09-10 d1ugva_ SH3-domain
0052588 10341 2008-09-10 d2f2va1 SH3-domain
0037667 3285 2005-09-08 d1fmka1 SH3-domain
0043613 3215 2005-09-08 d1shfa_ SH3-domain
0045834 8750 2008-09-10 d1awja_ SH3-domain
0047146 10192 2008-09-10 d1h92a_ SH3-domain
0047819 5679 2008-09-10 d1kjwa1 SH3-domain
0049871 8702 2008-09-10 d1ue9a_ SH3-domain
0050508 1836 2008-09-10 d1wfwa_ SH3-domain
0036029 3168 2005-09-08 d1ckaa_ SH3-domain
0042039 3181 2005-09-08 d1ov3a1 SH3-domain
0045082 3062 2005-09-08 d1ycsb2 SH3-domain
0046960 6654 2008-09-10 d1gcqc_ SH3-domain
0047724 6186 2008-09-10 d1k1za_ SH3-domain
0049439 8463 2008-09-10 d1spka_ SH3-domain
0049918 10500 2008-09-10 d1uj0a_ SH3-domain
0053615 7984 2010-05-31 d1u5sa1 SH3-domain
0038838 725 2005-09-08 d1i1ja_ SH3-domain
0044361 2744 2005-09-08 d1uhca_ SH3-domain
0045920 6644 2008-09-10 d1bb9a_ SH3-domain
0047507 9704 2008-09-10 d1j3ta_ SH3-domain
0048617 10844 2008-09-10 d1oota_ SH3-domain
0049890 1933 2008-09-10 d1ug1a_ SH3-domain
0051651 3034 2008-09-10 d1zuua1 SH3-domain
0036795 2120 2005-09-08 d1e6ha_ SH3-domain
0042705 3180 2005-09-08 d1qcfa1 SH3-domain
0045813 10287 2008-09-10 d1arka_ SH3-domain
0047043 10583 2008-09-10 d1gria2 SH3-domain
0047765 9756 2008-09-10 d1k9aa1 SH3-domain
0049867 10095 2008-09-10 d1udla_ SH3-domain
0050000 10349 2008-09-10 d1uuea_ SH3-domain
0041374 1689 2005-09-08 d1ng2a2 SH3-domain
0044917 245 2005-09-08 d1vyva1 SH3-domain
0046957 10694 2008-09-10 d1gbra_ SH3-domain
0047663 10018 2008-09-10 d1jqqa_ SH3-domain
0049376 10704 2008-09-10 d1sema_ SH3-domain
0049905 9940 2008-09-10 d1uhfa_ SH3-domain
0052732 9084 2008-09-10 d2fo0a1 SH3-domain
0038478 2071 2005-09-08 d1h8ka_ SH3-domain
0043854 1264 2005-09-08 d1t3la1 SH3-domain
0045835 10621 2008-09-10 d1awwa_ SH3-domain
0047233 9587 2008-09-10 d1hsqa_ SH3-domain
0048550 10607 2008-09-10 d1oeba_ SH3-domain
0049882 9494 2008-09-10 d1uffa_ SH3-domain
0050583 6066 2008-09-10 d1wiea_ SH3-domain