A superfamily is represented by one or more models;
usually there is more than one model representing the superfamily.
Since each model is built to capture the whole superfamily, they are likely to
be overlapping and sometimes are mostly overlapping or even redundant to each
other. Also models often do not score their own seed sequence more highly than
other sequences in the superfamily, so it is a mistake to think that the model
represents the seed sequence.
Plots showing hydrophobicity, match emmission probabilities and
insertion/deletion probabilities can be viewed for each model by following the model ID link.
All 131 SUPERFAMILY models representing the Nucleic acid-binding proteins superfamily
Model ID | No. of seqs | Build date | Seed sequence | Family of seed |
0045922 |
1481 |
2008-09-10 |
d1bbua1 |
Anticodon-binding domain |
0046050 |
1989 |
2008-09-10 |
d1c0aa1 |
Anticodon-binding domain |
0036711 |
436 |
2005-09-08 |
d1e1oa1 |
Anticodon-binding domain |
0045898 |
2347 |
2008-09-10 |
d1b8aa1 |
Anticodon-binding domain |
0046921 |
1936 |
2008-09-10 |
d1g51a1 |
Anticodon-binding domain |
0046596 |
723 |
2008-09-10 |
d1eova1 |
Anticodon-binding domain |
0048308 |
1977 |
2008-09-10 |
d1n9wa1 |
Anticodon-binding domain |
0035732 |
201 |
2005-09-08 |
d1bvsa3 |
DNA helicase RuvA subunit, N-terminal domain |
0036158 |
201 |
2005-09-08 |
d1cuka3 |
DNA helicase RuvA subunit, N-terminal domain |
0039264 |
196 |
2005-09-08 |
d1ixra2 |
DNA helicase RuvA subunit, N-terminal domain |
0042019 |
4 |
2005-09-08 |
d1otcb_ |
Single strand DNA-binding domain, SSB |
0048167 |
45 |
2008-09-10 |
d1miua5 |
Single strand DNA-binding domain, SSB |
0048643 |
17 |
2008-09-10 |
d1otca3 |
Single strand DNA-binding domain, SSB |
0050030 |
509 |
2008-09-10 |
d1v1qa_ |
Single strand DNA-binding domain, SSB |
0053338 |
1712 |
2008-09-10 |
d3ulla_ |
Single strand DNA-binding domain, SSB |
0037226 |
33 |
2005-09-08 |
d1ewia_ |
Single strand DNA-binding domain, SSB |
0047920 |
269 |
2008-09-10 |
d1l1oc_ |
Single strand DNA-binding domain, SSB |
0048514 |
367 |
2008-09-10 |
d1o7ia_ |
Single strand DNA-binding domain, SSB |
0050994 |
78 |
2008-09-10 |
d1xjva1 |
Single strand DNA-binding domain, SSB |
0043000 |
386 |
2005-09-08 |
d1quqa_ |
Single strand DNA-binding domain, SSB |
0037576 |
326 |
2005-09-08 |
d1fgua1 |
Single strand DNA-binding domain, SSB |
0039281 |
25 |
2005-09-08 |
d1iyjb3 |
Single strand DNA-binding domain, SSB |
0047474 |
47 |
2008-09-10 |
d1iyjb5 |
Single strand DNA-binding domain, SSB |
0048166 |
66 |
2008-09-10 |
d1miua4 |
Single strand DNA-binding domain, SSB |
0048642 |
18 |
2008-09-10 |
d1otca2 |
Single strand DNA-binding domain, SSB |
0049071 |
101 |
2008-09-10 |
d1qzga_ |
Single strand DNA-binding domain, SSB |
0049870 |
1891 |
2008-09-10 |
d1ue1a_ |
Single strand DNA-binding domain, SSB |
0046777 |
327 |
2008-09-10 |
d1fgua2 |
Single strand DNA-binding domain, SSB |
0049372 |
1875 |
2008-09-10 |
d1se8a_ |
Single strand DNA-binding domain, SSB |
0047473 |
25 |
2008-09-10 |
d1iyjb4 |
Single strand DNA-binding domain, SSB |
0048165 |
84 |
2008-09-10 |
d1miua3 |
Single strand DNA-binding domain, SSB |
0048641 |
86 |
2008-09-10 |
d1otca1 |
Single strand DNA-binding domain, SSB |
0049051 |
1954 |
2008-09-10 |
d1qvca_ |
Single strand DNA-binding domain, SSB |
0050995 |
65 |
2008-09-10 |
d1xjva2 |
Single strand DNA-binding domain, SSB |
0040310 |
6 |
2005-09-08 |
d1kxla_ |
Single strand DNA-binding domain, SSB |
0043001 |
135 |
2005-09-08 |
d1quqb_ |
Single strand DNA-binding domain, SSB |
0050616 |
292 |
2008-09-10 |
d1wjja_ |
Single strand DNA-binding domain, SSB |
0048176 |
2160 |
2008-09-10 |
d1mkha_ |
Myf domain |
0048839 |
2038 |
2008-09-10 |
d1pxfa_ |
Myf domain |
0048442 |
2144 |
2008-09-10 |
d1ntga_ |
Myf domain |
0048844 |
629 |
2008-09-10 |
d1pysb3 |
Myf domain |
0037641 |
444 |
2005-09-08 |
d1fl0a_ |
Myf domain |
0038054 |
299 |
2005-09-08 |
d1gd7a_ |
Myf domain |
0048841 |
1622 |
2008-09-10 |
d1pyba_ |
Myf domain |
0037626 |
325 |
2005-09-08 |
d1fjgq_ |
Cold shock DNA-binding domain-like |
0046097 |
2911 |
2008-09-10 |
d1c9oa_ |
Cold shock DNA-binding domain-like |
0047483 |
459 |
2008-09-10 |
d1iz6a2 |
Cold shock DNA-binding domain-like |
0049181 |
1093 |
2008-09-10 |
d1ripa_ |
Cold shock DNA-binding domain-like |
0051177 |
894 |
2008-09-10 |
d1y14b1 |
Cold shock DNA-binding domain-like |
0054597 |
1030 |
2010-05-31 |
d2qamc2 |
Cold shock DNA-binding domain-like |
0054772 |
1047 |
2010-05-31 |
d2zjra2 |
Cold shock DNA-binding domain-like |
0038590 |
626 |
2005-09-08 |
d1hh2p1 |
Cold shock DNA-binding domain-like |
0040675 |
896 |
2005-09-08 |
d1luza_ |
Cold shock DNA-binding domain-like |
0044179 |
263 |
2005-09-08 |
d1u0la1 |
Cold shock DNA-binding domain-like |
0046800 |
1388 |
2008-09-10 |
d1fjgl_ |
Cold shock DNA-binding domain-like |
0047328 |
1104 |
2008-09-10 |
d1i94q_ |
Cold shock DNA-binding domain-like |
0048887 |
3043 |
2008-09-10 |
d1q46a2 |
Cold shock DNA-binding domain-like |
0054165 |
94 |
2010-05-31 |
d2ix0a1 |
Cold shock DNA-binding domain-like |
0054279 |
543 |
2010-05-31 |
d2nn6h1 |
Cold shock DNA-binding domain-like |
0054724 |
305 |
2010-05-31 |
d2vnud3 |
Cold shock DNA-binding domain-like |
0036299 |
204 |
2005-09-08 |
d1d7qa_ |
Cold shock DNA-binding domain-like |
0046451 |
6877 |
2008-09-10 |
d1e3pa2 |
Cold shock DNA-binding domain-like |
0047715 |
1162 |
2008-09-10 |
d1k0ra1 |
Cold shock DNA-binding domain-like |
0049427 |
3367 |
2008-09-10 |
d1smxa_ |
Cold shock DNA-binding domain-like |
0050575 |
2574 |
2008-09-10 |
d1wi5a_ |
Cold shock DNA-binding domain-like |
0053734 |
6618 |
2010-05-31 |
d2ba0a1 |
Cold shock DNA-binding domain-like |
0054205 |
295 |
2010-05-31 |
d2ja9a1 |
Cold shock DNA-binding domain-like |
0034894 |
444 |
2005-09-08 |
d1a62a2 |
Cold shock DNA-binding domain-like |
0041615 |
59 |
2005-09-08 |
d1ny4a_ |
Cold shock DNA-binding domain-like |
0044303 |
226 |
2005-09-08 |
d1ueba3 |
Cold shock DNA-binding domain-like |
0046930 |
2954 |
2008-09-10 |
d1g6pa_ |
Cold shock DNA-binding domain-like |
0051100 |
275 |
2008-09-10 |
d1xtda2 |
Cold shock DNA-binding domain-like |
0052503 |
2958 |
2008-09-10 |
d2es2a1 |
Cold shock DNA-binding domain-like |
0054167 |
449 |
2010-05-31 |
d2ix0a3 |
Cold shock DNA-binding domain-like |
0054593 |
671 |
2010-05-31 |
d2qall1 |
Cold shock DNA-binding domain-like |
0054754 |
3820 |
2010-05-31 |
d2z0sa1 |
Cold shock DNA-binding domain-like |
0043292 |
340 |
2005-09-08 |
d1rl2a2 |
Cold shock DNA-binding domain-like |
0047223 |
924 |
2008-09-10 |
d1hr0w_ |
Cold shock DNA-binding domain-like |
0047828 |
7475 |
2008-09-10 |
d1kl9a2 |
Cold shock DNA-binding domain-like |
0049576 |
591 |
2008-09-10 |
d1t9ha1 |
Cold shock DNA-binding domain-like |
0052107 |
695 |
2008-09-10 |
d2c35b1 |
Cold shock DNA-binding domain-like |
0053990 |
1041 |
2010-05-31 |
d2gy9q1 |
Cold shock DNA-binding domain-like |
0054276 |
415 |
2010-05-31 |
d2nn6g1 |
Cold shock DNA-binding domain-like |
0054723 |
501 |
2010-05-31 |
d2vnud2 |
Cold shock DNA-binding domain-like |
0039578 |
14 |
2005-09-08 |
d1jjga_ |
Cold shock DNA-binding domain-like |
0045011 |
59 |
2005-09-08 |
d1x6oa2 |
Cold shock DNA-binding domain-like |
0047019 |
3071 |
2008-09-10 |
d1go3e1 |
Cold shock DNA-binding domain-like |
0047679 |
688 |
2008-09-10 |
d1jt8a_ |
Cold shock DNA-binding domain-like |
0048170 |
2916 |
2008-09-10 |
d1mjca_ |
Cold shock DNA-binding domain-like |
0050502 |
1849 |
2008-09-10 |
d1wfqa_ |
Cold shock DNA-binding domain-like |
0054176 |
1042 |
2010-05-31 |
d2j01d2 |
Cold shock DNA-binding domain-like |
0054650 |
12 |
2010-05-31 |
d2r7da1 |
Cold shock DNA-binding domain-like |
0054855 |
8240 |
2010-05-31 |
d3bzka4 |
Cold shock DNA-binding domain-like |
0037529 |
341 |
2005-09-08 |
d1ffka2 |
Cold shock DNA-binding domain-like |
0041327 |
58 |
2005-09-08 |
d1ne3a_ |
Cold shock DNA-binding domain-like |
0044302 |
622 |
2005-09-08 |
d1ueba2 |
Cold shock DNA-binding domain-like |
0045976 |
407 |
2008-09-10 |
d1bkba2 |
Cold shock DNA-binding domain-like |
0052498 |
458 |
2008-09-10 |
d2eifa2 |
Cold shock DNA-binding domain-like |
0054166 |
2151 |
2010-05-31 |
d2ix0a2 |
Cold shock DNA-binding domain-like |
0054282 |
424 |
2010-05-31 |
d2nn6i1 |
Cold shock DNA-binding domain-like |
0045777 |
972 |
2008-09-10 |
d1ah9a_ |
Cold shock DNA-binding domain-like |
0047147 |
1429 |
2008-09-10 |
d1h95a_ |
Cold shock DNA-binding domain-like |
0047805 |
268 |
2008-09-10 |
d1khia2 |
Cold shock DNA-binding domain-like |
0049455 |
9827 |
2008-09-10 |
d1sroa_ |
Cold shock DNA-binding domain-like |
0051771 |
8174 |
2008-09-10 |
d2ahob2 |
Cold shock DNA-binding domain-like |
0054212 |
2205 |
2010-05-31 |
d2je6i1 |
Cold shock DNA-binding domain-like |
0054722 |
424 |
2010-05-31 |
d2vnud1 |
Cold shock DNA-binding domain-like |
0037797 |
33 |
2005-09-08 |
d1fvia1 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0045686 |
61 |
2008-09-10 |
d1a0ia1 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0050885 |
845 |
2008-09-10 |
d1x9na2 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0042114 |
49 |
2005-09-08 |
d1p16a1 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0046163 |
125 |
2008-09-10 |
d1ckma1 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0036423 |
257 |
2005-09-08 |
d1dgsa2 |
DNA ligase/mRNA capping enzyme postcatalytic domain |
0039498 |
15 |
2005-09-08 |
d1je5a_ |
Phage ssDNA-binding proteins |
0047028 |
34 |
2008-09-10 |
d1gpca_ |
Phage ssDNA-binding proteins |
0038296 |
10 |
2005-09-08 |
d1gvpa_ |
Phage ssDNA-binding proteins |
0048748 |
4 |
2008-09-10 |
d1pfsa_ |
Phage ssDNA-binding proteins |
0053683 |
19 |
2010-05-31 |
d2a1ka1 |
Phage ssDNA-binding proteins |
0049722 |
112 |
2008-09-10 |
d1twfh_ |
RNA polymerase subunit RBP8 |
0047013 |
76 |
2008-09-10 |
d1gm5a2 |
RecG "wedge" domain |
0039892 |
29 |
2005-09-08 |
d1k3ra1 |
Hypothetical protein MTH1 (MT0001), insert domain |
0040655 |
339 |
2005-09-08 |
d1ltla_ |
DNA replication initiator (cdc21/cdc54) N-terminal domain |
0044549 |
229 |
2005-09-08 |
d1uwva1 |
TRAM domain |
0051418 |
919 |
2008-09-10 |
d1yvca1 |
TRAM domain |
0051294 |
954 |
2008-09-10 |
d1yeza1 |
TRAM domain |
0049790 |
277 |
2008-09-10 |
d1u5ka1 |
RecO N-terminal domain-like |
0052237 |
260 |
2008-09-10 |
d2cqaa1 |
TIP49 domain |
0053958 |
446 |
2010-05-31 |
d2gnra1 |
SSO2064-like |
0054168 |
1618 |
2010-05-31 |
d2ix0a4 |
RNB domain-like |
0054651 |
1638 |
2010-05-31 |
d2r7da2 |
RNB domain-like |
0054725 |
1632 |
2010-05-31 |
d2vnud4 |
RNB domain-like |