SUPERFAMILY 1.75 HMM library and genome assignments server

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MOP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 13 SUPERFAMILY models representing the MOP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047063 902 2008-09-10 d1guta_ Molybdate/tungstate binding protein MOP
0046847 890 2008-09-10 d1fr3a_ Molybdate/tungstate binding protein MOP
0047155 773 2008-09-10 d1h9ra1 BiMOP, duplicated molybdate-binding domain
0047154 988 2008-09-10 d1h9ma2 BiMOP, duplicated molybdate-binding domain
0047156 616 2008-09-10 d1h9ra2 BiMOP, duplicated molybdate-binding domain
0047153 922 2008-09-10 d1h9ma1 BiMOP, duplicated molybdate-binding domain
0046904 1314 2008-09-10 d1g2913 ABC-transporter additional domain
0048857 1867 2008-09-10 d1q12a1 ABC-transporter additional domain
0050043 1493 2008-09-10 d1v43a2 ABC-transporter additional domain
0048658 584 2008-09-10 d1oxsc1 ABC-transporter additional domain
0046905 1428 2008-09-10 d1g2914 ABC-transporter additional domain
0050042 1115 2008-09-10 d1v43a1 ABC-transporter additional domain
0054916 1207 2010-05-31 d3d31a1 ABC-transporter additional domain