SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PRC-barrel domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the PRC-barrel domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037265 96 2005-09-08 d1eysh1 Photosynthetic reaction centre, H-chain, cytoplasmic domain
0042908 24 2005-09-08 d1qovh1 Photosynthetic reaction centre, H-chain, cytoplasmic domain
0036658 78 2005-09-08 d1dxrh1 Photosynthetic reaction centre, H-chain, cytoplasmic domain
0042374 250 2005-09-08 d1pm3a_ MTH1895
0044351 38 2005-09-08 d1ugja_ RIKEN cDNA 2310057j16 protein (KIAA1543)
0052566 697 2008-09-10 d2f1la1 RimM C-terminal domain-like