SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 11 SUPERFAMILY models representing the EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047821 233 2008-09-10 d1kk1a2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0039671 852 2005-09-08 d1jnya2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0036957 511 2005-09-08 d1efca2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0050422 28 2008-09-10 d1wb1a3 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0046254 2028 2008-09-10 d1d2ea2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0037406 592 2005-09-08 d1f60a2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0051768 232 2008-09-10 d2ahoa2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0049291 233 2008-09-10 d1s0ua2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0043132 482 2005-09-08 d1r5ba2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0037247 707 2005-09-08 d1exma2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
0051647 1001 2008-09-10 d1zunb2 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain