SUPERFAMILY 1.75 HMM library and genome assignments server

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Alanine racemase C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Alanine racemase C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043196 276 2005-09-08 d1rcqa1 Alanine racemase
0050170 1155 2008-09-10 d1vfsa1 Alanine racemase
0035464 276 2005-09-08 d1bd0a1 Alanine racemase
0047840 1307 2008-09-10 d1knwa1 Eukaryotic ODC-like
0053369 38 2008-09-10 d7odca1 Eukaryotic ODC-like
0046698 1372 2008-09-10 d1f3ta1 Eukaryotic ODC-like
0038617 8 2005-09-08 d1hkva1 Eukaryotic ODC-like
0044144 9 2005-09-08 d1twia1 Eukaryotic ODC-like