SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PK beta-barrel domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the PK beta-barrel domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036700 368 2005-09-08 d1e0ta1 Pyruvate kinase beta-barrel domain
0042358 366 2005-09-08 d1pkma1 Pyruvate kinase beta-barrel domain
0034866 365 2005-09-08 d1a49a1 Pyruvate kinase beta-barrel domain
0042355 359 2005-09-08 d1pkla1 Pyruvate kinase beta-barrel domain
0040512 369 2005-09-08 d1liua1 Pyruvate kinase beta-barrel domain
0034858 360 2005-09-08 d1a3wa1 Pyruvate kinase beta-barrel domain
0041702 127 2005-09-08 d1o65a_ MOSC (MOCO sulphurase C-terminal) domain
0042000 54 2005-09-08 d1orua_ MOSC (MOCO sulphurase C-terminal) domain