SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Lipocalins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 69 SUPERFAMILY models representing the Lipocalins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051412 686 2008-09-10 d1yupa1 Retinol binding protein-like
0037251 191 2005-09-08 d1exsa_ Retinol binding protein-like
0040311 196 2005-09-08 d1kxoa_ Retinol binding protein-like
0047014 801 2008-09-10 d1gm6a_ Retinol binding protein-like
0048407 418 2008-09-10 d1np1a_ Retinol binding protein-like
0046633 454 2008-09-10 d1euoa_ Retinol binding protein-like
0047874 839 2008-09-10 d1kt7a_ Retinol binding protein-like
0054239 3 2010-05-31 d2joza1 Retinol binding protein-like
0035581 124 2005-09-08 d1bj7a_ Retinol binding protein-like
0046467 54 2008-09-10 d1e5pa_ Retinol binding protein-like
0047302 354 2008-09-10 d1i4ua_ Retinol binding protein-like
0049020 711 2008-09-10 d1qqsa_ Retinol binding protein-like
0048251 684 2008-09-10 d1n0sa_ Retinol binding protein-like
0051695 693 2008-09-10 d2a2ua_ Retinol binding protein-like
0038129 270 2005-09-08 d1gkab_ Retinol binding protein-like
0042749 43 2005-09-08 d1qfta_ Retinol binding protein-like
0046613 307 2008-09-10 d1erxa_ Retinol binding protein-like
0047710 677 2008-09-10 d1jzua_ Retinol binding protein-like
0051470 677 2008-09-10 d1z24a1 Retinol binding protein-like
0035442 230 2005-09-08 d1bbpa_ Retinol binding protein-like
0047275 801 2008-09-10 d1i05a_ Retinol binding protein-like
0048536 595 2008-09-10 d1obpa_ Retinol binding protein-like
0036686 544 2005-09-08 d1dzka_ Retinol binding protein-like
0046640 672 2008-09-10 d1ew3a_ Retinol binding protein-like
0047968 705 2008-09-10 d1lf7a_ Retinol binding protein-like
0051000 604 2008-09-10 d1xkia_ Retinol binding protein-like
0042679 290 2005-09-08 d1qabe_ Retinol binding protein-like
0046604 677 2008-09-10 d1epba_ Retinol binding protein-like
0047376 905 2008-09-10 d1iiua_ Retinol binding protein-like
0049055 663 2008-09-10 d1qwda_ Retinol binding protein-like
0052756 674 2008-09-10 d2ftba1 Fatty acid binding protein-like
0035357 245 2005-09-08 d1b56a_ Fatty acid binding protein-like
0041962 242 2005-09-08 d1opaa_ Fatty acid binding protein-like
0045526 243 2005-09-08 d3ifba_ Fatty acid binding protein-like
0052611 668 2008-09-10 d2f73a1 Fatty acid binding protein-like
0036126 247 2005-09-08 d1crba_ Fatty acid binding protein-like
0038640 248 2005-09-08 d1hmsa_ Fatty acid binding protein-like
0041665 232 2005-09-08 d1o1va_ Fatty acid binding protein-like
0051673 700 2008-09-10 d2a0aa1 Fatty acid binding protein-like
0037772 241 2005-09-08 d1ftpa_ Fatty acid binding protein-like
0040605 244 2005-09-08 d1lpja_ Fatty acid binding protein-like
0042384 247 2005-09-08 d1pmpa_ Fatty acid binding protein-like
0051321 697 2008-09-10 d1yiva1 Fatty acid binding protein-like
0052750 693 2008-09-10 d2fs6a1 Fatty acid binding protein-like
0036878 232 2005-09-08 d1eala_ Fatty acid binding protein-like
0040216 242 2005-09-08 d1kqwa_ Fatty acid binding protein-like
0044914 249 2005-09-08 d1vyfa_ Fatty acid binding protein-like
0046935 701 2008-09-10 d1g7na_ Fatty acid binding protein-like
0035900 246 2005-09-08 d1cbia_ Fatty acid binding protein-like
0041104 249 2005-09-08 d1mvga_ Fatty acid binding protein-like
0049349 660 2008-09-10 d1sa8a_ Fatty acid binding protein-like
0037502 247 2005-09-08 d1fdqa_ Fatty acid binding protein-like
0040483 231 2005-09-08 d1lfoa_ Fatty acid binding protein-like
0042174 245 2005-09-08 d1p6pa_ Fatty acid binding protein-like
0038993 244 2005-09-08 d1ifca_ Fatty acid binding protein-like
0041743 241 2005-09-08 d1o8va_ Fatty acid binding protein-like
0044077 248 2005-09-08 d1towa_ Fatty acid binding protein-like
0035749 248 2005-09-08 d1bwya_ Fatty acid binding protein-like
0038089 234 2005-09-08 d1ggla_ Fatty acid binding protein-like
0040896 228 2005-09-08 d1mdca_ Fatty acid binding protein-like
0045830 564 2008-09-10 d1avgi_ Thrombin inhibitor
0041814 27 2005-09-08 d1oeja_ Hypothetical protein YodA
0043076 37 2005-09-08 d1r0ua_ Hypothetical protein YwiB
0052867 61 2008-09-10 d2gc9a1 Phenolic acid decarboxylase (PAD)
0050277 29 2008-09-10 d1vpra1 Dinoflagellate luciferase repeat
0052746 148 2008-09-10 d2fr2a1 Rv2717c-like
0051678 145 2008-09-10 d2a13a1 Rv2717c-like
0054336 87 2010-05-31 d2o62a2 All1756-like
0054335 70 2010-05-31 d2o62a1 All1756-like