SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Cyclophilin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 29 SUPERFAMILY models representing the Cyclophilin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038362 1134 2005-09-08 d1h0pa_ Cyclophilin (peptidylprolyl isomerase)
0050106 3690 2008-09-10 d1v9ta_ Cyclophilin (peptidylprolyl isomerase)
0034847 1126 2005-09-08 d1a33a_ Cyclophilin (peptidylprolyl isomerase)
0042900 1122 2005-09-08 d1qoia_ Cyclophilin (peptidylprolyl isomerase)
0051149 3763 2008-09-10 d1xyha1 Cyclophilin (peptidylprolyl isomerase)
0052158 3703 2008-09-10 d2cfea1 Cyclophilin (peptidylprolyl isomerase)
0039184 1131 2005-09-08 d1ista_ Cyclophilin (peptidylprolyl isomerase)
0050399 3705 2008-09-10 d1w8ma_ Cyclophilin (peptidylprolyl isomerase)
0051928 3726 2008-09-10 d2b71a1 Cyclophilin (peptidylprolyl isomerase)
0036678 1132 2005-09-08 d1dywa_ Cyclophilin (peptidylprolyl isomerase)
0045440 1131 2005-09-08 d2rmca_ Cyclophilin (peptidylprolyl isomerase)
0051587 3747 2008-09-10 d1zkca1 Cyclophilin (peptidylprolyl isomerase)
0052763 3675 2008-09-10 d2fu0a1 Cyclophilin (peptidylprolyl isomerase)
0042879 1131 2005-09-08 d1qnga_ Cyclophilin (peptidylprolyl isomerase)
0051132 3754 2008-09-10 d1xwna1 Cyclophilin (peptidylprolyl isomerase)
0052109 3653 2008-09-10 d2c3ba1 Cyclophilin (peptidylprolyl isomerase)
0039026 1127 2005-09-08 d1ihga2 Cyclophilin (peptidylprolyl isomerase)
0050386 3686 2008-09-10 d1w74a_ Cyclophilin (peptidylprolyl isomerase)
0051693 3725 2008-09-10 d2a2na1 Cyclophilin (peptidylprolyl isomerase)
0054659 3960 2010-05-31 d2r99a1 Cyclophilin (peptidylprolyl isomerase)
0036200 1127 2005-09-08 d1cyna_ Cyclophilin (peptidylprolyl isomerase)
0051523 3614 2008-09-10 d1z81a1 Cyclophilin (peptidylprolyl isomerase)
0052507 3719 2008-09-10 d2esla1 Cyclophilin (peptidylprolyl isomerase)
0040592 1084 2005-09-08 d1lopa_ Cyclophilin (peptidylprolyl isomerase)
0051043 3726 2008-09-10 d1xo7a_ Cyclophilin (peptidylprolyl isomerase)
0051982 3719 2008-09-10 d2bitx1 Cyclophilin (peptidylprolyl isomerase)
0045013 43 2005-09-08 d1x7fa1 Outer surface protein, C-terminal domain
0051660 53 2008-09-10 d1zx8a1 TM1367-like
0054505 953 2010-05-31 d2phcb1 PH0987 C-terminal domain-like