SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Hemopexin-like domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the Hemopexin-like domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048745 974 2008-09-10 d1pexa_ Hemopexin-like domain
0046971 984 2008-09-10 d1gena_ Hemopexin-like domain
0049470 978 2008-09-10 d1su3a2 Hemopexin-like domain
0047435 931 2008-09-10 d1itva_ Hemopexin-like domain
0046742 974 2008-09-10 d1fbla1 Hemopexin-like domain
0048961 951 2008-09-10 d1qhua1 Hemopexin-like domain
0047257 375 2008-09-10 d1hxna_ Hemopexin-like domain