SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Sialidases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 15 SUPERFAMILY models representing the Sialidases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041541 37 2005-09-08 d1nsca_ Sialidases (neuraminidases)
0050402 33 2008-09-10 d1w8oa3 Sialidases (neuraminidases)
0046723 5394 2008-09-10 d1f8ea_ Sialidases (neuraminidases)
0053303 2411 2008-09-10 d2slia2 Sialidases (neuraminidases)
0041196 845 2005-09-08 d1n1ta2 Sialidases (neuraminidases)
0050334 1068 2008-09-10 d1w0pa3 Sialidases (neuraminidases)
0049431 455 2008-09-10 d1so7a_ Sialidases (neuraminidases)
0053695 186 2010-05-31 d2aepa1 Sialidases (neuraminidases)
0046491 584 2008-09-10 d1e8ua_ Sialidases (neuraminidases)
0051948 5395 2008-09-10 d2bata_ Sialidases (neuraminidases)
0039096 37 2005-09-08 d1inva_ Sialidases (neuraminidases)
0050039 601 2008-09-10 d1v3ea_ Sialidases (neuraminidases)
0048217 1441 2008-09-10 d1ms9a2 Sialidases (neuraminidases)
0053333 1282 2008-09-10 d3sila_ Sialidases (neuraminidases)
0050026 13 2008-09-10 d1v0ea1 Endo-alpha-sialidase