SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

YVTN repeat-like/Quinoprotein amine dehydrogenase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the YVTN repeat-like/Quinoprotein amine dehydrogenase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053180 11409 2008-09-10 d2madh_ Methylamine dehydrogenase, H-chain
0048144 100 2008-09-10 d1mdah_ Methylamine dehydrogenase, H-chain
0045181 662 2005-09-08 d2bbkh_ Methylamine dehydrogenase, H-chain
0039648 900 2005-09-08 d1jmxb_ Quinohemoprotein amine dehydrogenase B chain
0047606 1458 2008-09-10 d1jjub_ Quinohemoprotein amine dehydrogenase B chain
0047917 8982 2008-09-10 d1l0qa2 YVTN repeat