SUPERFAMILY 1.75 HMM library and genome assignments server

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WD40 repeat-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 14 SUPERFAMILY models representing the WD40 repeat-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046612 13519 2008-09-10 d1erja_ WD40-repeat
0048759 5341 2008-09-10 d1pgua1 WD40-repeat
0048420 11824 2008-09-10 d1nr0a1 WD40-repeat
0054424 11035 2010-05-31 d2ovrb2 WD40-repeat
0047077 16637 2008-09-10 d1gxra_ WD40-repeat
0049440 16013 2008-09-10 d1sq9a_ WD40-repeat
0048681 14493 2008-09-10 d1p22a2 WD40-repeat
0048349 15414 2008-09-10 d1nexb2 WD40-repeat
0053623 11097 2010-05-31 d1vyhc1 WD40-repeat
0047024 13385 2008-09-10 d1gotb_ WD40-repeat
0048760 5399 2008-09-10 d1pgua2 WD40-repeat
0048421 8077 2008-09-10 d1nr0a2 WD40-repeat
0047761 14397 2008-09-10 d1k8kc_ WD40-repeat
0049784 13251 2008-09-10 d1u4ca_ Cell cycle arrest protein BUB3