SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

WW domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the WW domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036698 5 2005-09-08 d1e0na_ WW domain
0048391 2662 2008-09-10 d1nmva1 WW domain
0041717 709 2005-09-08 d1o6wa1 WW domain
0052570 1911 2008-09-10 d2f21a1 WW domain
0037434 756 2005-09-08 d1f8ab1 WW domain
0051430 711 2008-09-10 d1ywia1 WW domain
0036697 642 2005-09-08 d1e0la_ WW domain
0044033 750 2005-09-08 d1tk7a1 WW domain
0054744 82 2010-05-31 d2ysca1 WW domain
0039636 763 2005-09-08 d1jmqa_ WW domain
0052454 867 2008-09-10 d2dk1a1 WW domain
0036979 415 2005-09-08 d1eg3a3 WW domain
0049648 2132 2008-09-10 d1tk7a2 WW domain
0041718 911 2005-09-08 d1o6wa2 WW domain
0053863 2162 2010-05-31 d2e45a1 WW domain
0038884 824 2005-09-08 d1i5hw_ WW domain
0051620 700 2008-09-10 d1zr7a1 WW domain