SUPERFAMILY 1.75 HMM library and genome assignments server

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Carbonic anhydrase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Carbonic anhydrase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044675 371 2005-09-08 d1v9ea_ Carbonic anhydrase
0039488 367 2005-09-08 d1jd0a_ Carbonic anhydrase
0036507 369 2005-09-08 d1dmxa_ Carbonic anhydrase
0045490 366 2005-09-08 d2znca_ Carbonic anhydrase
0043265 371 2005-09-08 d1rj6a_ Carbonic anhydrase
0038524 371 2005-09-08 d1hcba_ Carbonic anhydrase
0045126 362 2005-09-08 d1znca_ Carbonic anhydrase
0040188 363 2005-09-08 d1koqa_ Carbonic anhydrase
0037649 371 2005-09-08 d1flja_ Carbonic anhydrase
0048038 1146 2008-09-10 d1luga_ Carbonic anhydrase