SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Pectin lyase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the Pectin lyase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047680 425 2008-09-10 d1jtaa_ Pectate lyase-like
0036933 249 2005-09-08 d1ee6a_ Pectate lyase-like
0048840 615 2008-09-10 d1pxza_ Pectate lyase-like
0045985 547 2008-09-10 d1bn8a_ Pectate lyase-like
0048515 613 2008-09-10 d1o88a_ Pectate lyase-like
0048737 701 2008-09-10 d1pcla_ Pectate lyase-like
0047350 474 2008-09-10 d1idka_ Pectin lyase
0048925 444 2008-09-10 d1qcxa_ Pectin lyase
0036209 504 2005-09-08 d1czfa_ Galacturonase
0049214 547 2008-09-10 d1rmga_ Galacturonase
0047186 2170 2008-09-10 d1hg8a_ Galacturonase
0041388 605 2005-09-08 d1nhca_ Galacturonase
0045962 1510 2008-09-10 d1bhea_ Galacturonase
0047750 2244 2008-09-10 d1k5ca_ Galacturonase
0047331 1299 2008-09-10 d1ia5a_ Galacturonase
0046293 236 2008-09-10 d1dbga_ Chondroitinase B
0048970 1388 2008-09-10 d1qjva_ Pectin methylesterase
0038225 346 2005-09-08 d1gq8a_ Pectin methylesterase
0042926 7 2005-09-08 d1qq1a_ P22 tailspike protein
0036321 275 2005-09-08 d1daba_ Virulence factor P.69 pertactin
0047142 842 2008-09-10 d1h80a_ iota-carrageenase
0049244 1178 2008-09-10 d1ru4a_ Pectate transeliminase
0048563 713 2008-09-10 d1ogmx2 Dextranase, catalytic domain
0049255 883 2008-09-10 d1rwra_ Filamentous hemagglutinin FhaB, secretion domain