SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

RmlC-like cupins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 68 SUPERFAMILY models representing the RmlC-like cupins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046598 993 2008-09-10 d1ep0a_ dTDP-sugar isomerase
0050652 1090 2008-09-10 d1wlta1 dTDP-sugar isomerase
0052088 577 2008-09-10 d2c0za1 dTDP-sugar isomerase
0049242 962 2008-09-10 d1rtva_ dTDP-sugar isomerase
0036688 264 2005-09-08 d1dzra_ dTDP-sugar isomerase
0049969 962 2008-09-10 d1upia_ dTDP-sugar isomerase
0054486 602 2010-05-31 d2pa7a1 dTDP-sugar isomerase
0041608 314 2005-09-08 d1nxma_ dTDP-sugar isomerase
0048558 955 2008-09-10 d1ofna_ dTDP-sugar isomerase
0048019 5916 2008-09-10 d1lrha_ Germin/Seed storage 7S protein
0049913 763 2008-09-10 d1uika2 Germin/Seed storage 7S protein
0046882 1218 2008-09-10 d1fxza2 Germin/Seed storage 7S protein
0048543 1223 2008-09-10 d1od5a2 Germin/Seed storage 7S protein
0053269 539 2008-09-10 d2phla2 Germin/Seed storage 7S protein
0041796 511 2005-09-08 d1od5a1 Germin/Seed storage 7S protein
0046334 1634 2008-09-10 d1dgwa_ Germin/Seed storage 7S protein
0049912 1189 2008-09-10 d1uika1 Germin/Seed storage 7S protein
0047411 773 2008-09-10 d1ipja2 Germin/Seed storage 7S protein
0046787 3167 2008-09-10 d1fi2a_ Germin/Seed storage 7S protein
0053268 682 2008-09-10 d2phla1 Germin/Seed storage 7S protein
0046333 965 2008-09-10 d1dgw.1 Germin/Seed storage 7S protein
0047515 3290 2008-09-10 d1j58a_ Germin/Seed storage 7S protein
0037841 390 2005-09-08 d1fxza1 Germin/Seed storage 7S protein
0047410 2215 2008-09-10 d1ipja1 Germin/Seed storage 7S protein
0042381 588 2005-09-08 d1pmia_ Type I phosphomannose isomerase
0051659 597 2008-09-10 d1zx5a1 Type I phosphomannose isomerase
0043023 203 2005-09-08 d1qwra_ Type I phosphomannose isomerase
0037258 344 2005-09-08 d1eyba_ Homogentisate dioxygenase
0047686 3805 2008-09-10 d1juha_ Quercetin 2,3-dioxygenase-like
0051192 5456 2008-09-10 d1y3ta1 Quercetin 2,3-dioxygenase-like
0050297 2014 2008-09-10 d1vr3a1 Acireductone dioxygenase
0051625 1585 2008-09-10 d1zrra1 Acireductone dioxygenase
0047506 1773 2008-09-10 d1j3qa_ Glucose-6-phosphate isomerase, GPI
0050871 1455 2008-09-10 d1x82a_ Glucose-6-phosphate isomerase, GPI
0040530 860 2005-09-08 d1lkna_ Hypothetical protein TM1112
0052595 2136 2008-09-10 d2f4pa1 TM1287-like
0050074 4030 2008-09-10 d1v70a_ TM1287-like
0051311 3169 2008-09-10 d1yhfa1 TM1287-like
0048484 4151 2008-09-10 d1o4ta_ TM1287-like
0052017 1037 2008-09-10 d2bnma2 TM1459-like
0050205 5236 2008-09-10 d1vj2a_ TM1459-like
0049374 1253 2008-09-10 d1sefa_ YlbA-like
0043192 440 2005-09-08 d1rc6a_ YlbA-like
0043706 718 2005-09-08 d1sq4a_ YlbA-like
0043585 639 2005-09-08 d1sfna_ YlbA-like
0039319 405 2005-09-08 d1j1la_ Pirin-like
0049672 1293 2008-09-10 d1tq5a1 Pirin-like
0045016 81 2005-09-08 d1x8ma_ KduI-like
0051431 172 2008-09-10 d1ywka1 KduI-like
0051095 266 2008-09-10 d1xsqa_ Ureidoglycolate hydrolase AllA
0051957 274 2008-09-10 d2bdra1 Ureidoglycolate hydrolase AllA
0051250 1365 2008-09-10 d1y9qa2 Probable transcriptional regulator VC1968, C-terminal domain
0051599 322 2008-09-10 d1znpa1 YML079-like
0050937 302 2008-09-10 d1xe7a_ YML079-like
0051410 322 2008-09-10 d1yuda1 YML079-like
0051339 199 2008-09-10 d1ylla1 PA5104-like
0051939 2006 2008-09-10 d2b8ma1 MJ0764-like
0053952 666 2010-05-31 d2gm6a1 Cysteine dioxygenase type I
0054124 414 2010-05-31 d2ic1a1 Cysteine dioxygenase type I
0051916 478 2008-09-10 d2b5ha1 Cysteine dioxygenase type I
0051300 925 2008-09-10 d1yfua1 3-hydroxyanthranilic acid dioxygenase-like
0053679 802 2010-05-31 d1zvfa1 3-hydroxyanthranilic acid dioxygenase-like
0054317 550 2010-05-31 d2o1qa1 Acetylacetone-cleaving enzyme-like
0054433 177 2010-05-31 d2oyza1 VPA0057-like
0054507 1892 2010-05-31 d2phda1 Gentisate 1,2-dioxygenase-like
0053799 2286 2010-05-31 d2d40a1 Gentisate 1,2-dioxygenase-like
0054844 1672 2010-05-31 d3bu7a1 Gentisate 1,2-dioxygenase-like
0054560 1733 2010-05-31 d2pyta1 EutQ-like