SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Clavaminate synthase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 21 SUPERFAMILY models representing the Clavaminate synthase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050415 2509 2008-09-10 d1w9ya1 Penicillin synthase-like
0047027 2507 2008-09-10 d1gp6a_ Penicillin synthase-like
0046302 1841 2008-09-10 d1dcsa_ Penicillin synthase-like
0048968 2349 2008-09-10 d1qjea_ Penicillin synthase-like
0046391 600 2008-09-10 d1ds1a_ Clavaminate synthase
0047666 171 2008-09-10 d1jr7a_ Gab protein (hypothetical protein YgaT)
0046468 47 2008-09-10 d1e5sa_ Type II Proline 3-hydroxylase (proline oxidase)
0041871 313 2005-09-08 d1oiha_ TauD/TfdA-like
0047081 1068 2008-09-10 d1gy9a_ TauD/TfdA-like
0047105 1011 2008-09-10 d1h2ka_ Hypoxia-inducible factor HIF ihhibitor (FIH1)
0047646 319 2008-09-10 d1jopa_ YhcH-like
0041601 211 2005-09-08 d1nx4a_ gamma-Butyrobetaine hydroxylase
0051173 722 2008-09-10 d1y0za_ gamma-Butyrobetaine hydroxylase
0051687 822 2008-09-10 d2a1xa1 PhyH-like
0052654 1804 2008-09-10 d2fcta1 PhyH-like
0052657 738 2008-09-10 d2fdia1 AlkB-like
0053127 582 2008-09-10 d2iuwa1 AlkB-like
0050303 811 2008-09-10 d1vrba1 Asparaginyl hydroxylase-like
0052278 195 2008-09-10 d2csga1 YbiU-like
0054938 126 2010-05-31 d3dl3a1 TehB-like
0054820 129 2010-05-31 d3bb6a1 TehB-like