SUPERFAMILY 1.75 HMM library and genome assignments server

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Duplicated hybrid motif superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the Duplicated hybrid motif superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047009 1029 2008-09-10 d1glaf_ Glucose permease-like
0052936 1035 2008-09-10 d2gpra_ Glucose permease-like
0047037 1028 2008-09-10 d1gpra_ Glucose permease-like
0043026 756 2005-09-08 d1qwya_ Peptidoglycan hydrolase LytM