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  Home > SCOP hierarchy > (Trans)glycosidases > Hidden Markov models

(Trans)glycosidases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 161 SUPERFAMILY models representing the (Trans)glycosidases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046963 1134 2008-09-10 d1gcya2 Amylase, catalytic domain
0047545 3233 2008-09-10 d1jaea2 Amylase, catalytic domain
0047897 491 2008-09-10 d1kwga2 Amylase, catalytic domain
0048530 4934 2008-09-10 d1ob0a2 Amylase, catalytic domain
0049099 670 2008-09-10 d1r46a2 Amylase, catalytic domain
0038123 812 2005-09-08 d1gjwa2 Amylase, catalytic domain
0040700 1512 2005-09-08 d1lwha2 Amylase, catalytic domain
0044281 822 2005-09-08 d1ud2a2 Amylase, catalytic domain
0050774 481 2008-09-10 d1x1na1 Amylase, catalytic domain
0051733 3302 2008-09-10 d2aaaa2 Amylase, catalytic domain
0039218 1294 2005-09-08 d1iv8a2 Amylase, catalytic domain
0045913 231 2008-09-10 d1b9za2 Amylase, catalytic domain
0046336 3213 2008-09-10 d1dhka2 Amylase, catalytic domain
0047591 3193 2008-09-10 d1ji1a3 Amylase, catalytic domain
0048242 3228 2008-09-10 d1mxga2 Amylase, catalytic domain
0049836 5642 2008-09-10 d1ua7a2 Amylase, catalytic domain
0050447 343 2008-09-10 d1wdpa1 Amylase, catalytic domain
0052913 3204 2008-09-10 d2gjpa2 Amylase, catalytic domain
0036198 1421 2005-09-08 d1cyga4 Amylase, catalytic domain
0046229 807 2008-09-10 d1cwya_ Amylase, catalytic domain
0046948 3214 2008-09-10 d1g94a2 Amylase, catalytic domain
0047875 516 2008-09-10 d1ktba2 Amylase, catalytic domain
0051975 3800 2008-09-10 d2bhua3 Amylase, catalytic domain
0052376 4675 2008-09-10 d2d3na2 Amylase, catalytic domain
0046152 3032 2008-09-10 d1ciua4 Amylase, catalytic domain
0046559 3823 2008-09-10 d1eh9a3 Amylase, catalytic domain
0047246 3699 2008-09-10 d1hvxa2 Amylase, catalytic domain
0048959 3747 2008-09-10 d1qhoa4 Amylase, catalytic domain
0049502 363 2008-09-10 d1szna2 Amylase, catalytic domain
0050760 3443 2008-09-10 d1wzaa2 Amylase, catalytic domain
0045828 3692 2008-09-10 d1avaa2 Amylase, catalytic domain
0046266 3730 2008-09-10 d1d3ca4 Amylase, catalytic domain
0048117 3838 2008-09-10 d1m7xa3 Amylase, catalytic domain
0049124 1407 2008-09-10 d1r7aa2 Amylase, catalytic domain
0049744 709 2008-09-10 d1tz7a1 Amylase, catalytic domain
0035310 72 2005-09-08 d1b1ya_ Amylase, catalytic domain
0040789 1310 2005-09-08 d1m53a2 Amylase, catalytic domain
0044469 1464 2005-09-08 d1uoka2 Amylase, catalytic domain
0046924 3283 2008-09-10 d1g5aa2 Amylase, catalytic domain
0047117 5655 2008-09-10 d1h3ga3 Amylase, catalytic domain
0047491 3382 2008-09-10 d1j0ha3 Amylase, catalytic domain
0053918 3033 2010-05-31 d2fhfa5 Amylase, catalytic domain
0037464 106 2005-09-08 d1fa2a_ Amylase, catalytic domain
0045947 5842 2008-09-10 d1bf2a3 Amylase, catalytic domain
0046139 3056 2008-09-10 d1cgta4 Amylase, catalytic domain
0046455 5166 2008-09-10 d1e43a2 Amylase, catalytic domain
0047236 3307 2008-09-10 d1ht6a2 Amylase, catalytic domain
0049424 3042 2008-09-10 d1smaa3 Amylase, catalytic domain
0049842 782 2008-09-10 d1uasa2 Amylase, catalytic domain
0051481 3835 2008-09-10 d1z32x2 Amylase, catalytic domain
0052962 3766 2008-09-10 d2guya2 Amylase, catalytic domain
0042224 1497 2005-09-08 d1pama4 Amylase, catalytic domain
0046023 3167 2008-09-10 d1bvza3 Amylase, catalytic domain
0046505 6679 2008-09-10 d1ea9c3 Amylase, catalytic domain
0047190 2672 2008-09-10 d1hiza_ beta-glycanases
0049716 407 2008-09-10 d1tvna1 beta-glycanases
0049986 765 2008-09-10 d1us3a2 beta-glycanases
0051153 596 2008-09-10 d1xyza_ beta-glycanases
0052061 246 2008-09-10 d2bvya2 beta-glycanases
0054219 1397 2010-05-31 d2je8a5 beta-glycanases
0046176 2442 2008-09-10 d1clxa_ beta-glycanases
0046891 867 2008-09-10 d1g0ca_ beta-glycanases
0047099 725 2008-09-10 d1h1na_ beta-glycanases
0048402 551 2008-09-10 d1nofa2 beta-glycanases
0048992 580 2008-09-10 d1qnra_ beta-glycanases
0049908 3977 2008-09-10 d1uhva2 beta-glycanases
0052173 173 2008-09-10 d2cita1 beta-glycanases
0053367 1026 2008-09-10 d7a3ha_ beta-glycanases
0046122 2651 2008-09-10 d1ceoa_ beta-glycanases
0049162 5027 2008-09-10 d1rh9a1 beta-glycanases
0050028 814 2008-09-10 d1v0la_ beta-glycanases
0051370 1644 2008-09-10 d1yq2a5 beta-glycanases
0052125 364 2008-09-10 d2c7fa2 beta-glycanases
0038605 123 2005-09-08 d1hjqa_ beta-glycanases
0045994 784 2008-09-10 d1bqca_ beta-glycanases
0047122 609 2008-09-10 d1h4pa_ beta-glycanases
0047542 340 2008-09-10 d1j9ya_ beta-glycanases
0048418 2281 2008-09-10 d1nq6a_ beta-glycanases
0049054 856 2008-09-10 d1qw9a2 beta-glycanases
0049705 571 2008-09-10 d1tuxa_ beta-glycanases
0049977 396 2008-09-10 d1ur4a_ beta-glycanases
0050404 601 2008-09-10 d1w91a2 beta-glycanases
0051146 797 2008-09-10 d1xyfa2 beta-glycanases
0037707 151 2005-09-08 d1foba_ beta-glycanases
0043920 453 2005-09-08 d1ta3b_ beta-glycanases
0045956 1175 2008-09-10 d1bg4a_ beta-glycanases
0047754 601 2008-09-10 d1k6aa_ beta-glycanases
0050130 2658 2008-09-10 d1vbua1 beta-glycanases
0036899 406 2005-09-08 d1ecea_ beta-glycanases
0046523 469 2008-09-10 d1edga_ beta-glycanases
0046782 2436 2008-09-10 d1fh9a_ beta-glycanases
0046993 725 2008-09-10 d1ghsa_ beta-glycanases
0048565 537 2008-09-10 d1ogsa2 beta-glycanases
0050004 5458 2008-09-10 d1uuqa_ beta-glycanases
0052086 201 2008-09-10 d2c0ha1 beta-glycanases
0054740 1355 2010-05-31 d2vzsa5 beta-glycanases
0045965 1799 2008-09-10 d1bhga3 beta-glycanases
0046607 695 2008-09-10 d1eqca_ beta-glycanases
0049976 1313 2008-09-10 d1ur1a_ beta-glycanases
0050215 3385 2008-09-10 d1vjza_ beta-glycanases
0052352 811 2008-09-10 d2cyga1 beta-glycanases
0046556 427 2008-09-10 d1egza_ beta-glycanases
0048295 1841 2008-09-10 d1n82a_ beta-glycanases
0050071 801 2008-09-10 d1v6ya_ beta-glycanases
0050643 679 2008-09-10 d1wkya2 beta-glycanases
0036535 371 2005-09-08 d1dp0a5 beta-glycanases
0038607 109 2005-09-08 d1hjsa_ beta-glycanases
0045806 653 2008-09-10 d1aq0a_ beta-glycanases
0045960 2607 2008-09-10 d1bgga_ Family 1 of glycosyl hydrolase
0050167 2776 2008-09-10 d1vffa1 Family 1 of glycosyl hydrolase
0042911 686 2005-09-08 d1qoxa_ Family 1 of glycosyl hydrolase
0047025 1067 2008-09-10 d1gowa_ Family 1 of glycosyl hydrolase
0041792 688 2005-09-08 d1od0a_ Family 1 of glycosyl hydrolase
0044581 640 2005-09-08 d1v02a_ Family 1 of glycosyl hydrolase
0046463 987 2008-09-10 d1e55a_ Family 1 of glycosyl hydrolase
0049894 2479 2008-09-10 d1ug6a_ Family 1 of glycosyl hydrolase
0042235 641 2005-09-08 d1pbga_ Family 1 of glycosyl hydrolase
0046102 1182 2008-09-10 d1cbga_ Family 1 of glycosyl hydrolase
0050431 994 2008-09-10 d1wcga1 Family 1 of glycosyl hydrolase
0038179 604 2005-09-08 d1gnxa_ Family 1 of glycosyl hydrolase
0046471 993 2008-09-10 d1e6qm_ Family 1 of glycosyl hydrolase
0049050 2289 2008-09-10 d1qvba_ Family 1 of glycosyl hydrolase
0050412 1342 2008-09-10 d1w9pa1 Type II chitinase
0052495 173 2008-09-10 d2ebna_ Type II chitinase
0046470 1511 2008-09-10 d1e6pa2 Type II chitinase
0046595 300 2008-09-10 d1eoka_ Type II chitinase
0047436 3212 2008-09-10 d1itxa1 Type II chitinase
0036926 351 2005-09-08 d1edta_ Type II chitinase
0046528 1547 2008-09-10 d1edqa2 Type II chitinase
0048598 499 2008-09-10 d1om0a_ Type II chitinase
0046497 2928 2008-09-10 d1e9la1 Type II chitinase
0040522 751 2005-09-08 d1ljya1 Type II chitinase
0048314 1116 2008-09-10 d1nara_ Type II chitinase
0053049 1545 2008-09-10 d2hvma_ Type II chitinase
0038608 735 2005-09-08 d1hjxa1 Type II chitinase
0046186 547 2008-09-10 d1cnva_ Type II chitinase
0047795 1497 2008-09-10 d1kfwa1 Type II chitinase
0040488 730 2005-09-08 d1lg2a1 Type II chitinase
0047637 1541 2008-09-10 d1jnda1 Type II chitinase
0046256 3206 2008-09-10 d1d2ka1 Type II chitinase
0047217 937 2008-09-10 d1hp5a1 beta-N-acetylhexosaminidase catalytic domain
0053948 1109 2010-05-31 d2gjxa1 beta-N-acetylhexosaminidase catalytic domain
0051312 465 2008-09-10 d1yhta1 beta-N-acetylhexosaminidase catalytic domain
0048404 876 2008-09-10 d1nowa1 beta-N-acetylhexosaminidase catalytic domain
0048920 841 2008-09-10 d1qbaa3 beta-N-acetylhexosaminidase catalytic domain
0046643 2127 2008-09-10 d1ex1a1 NagZ-like
0049678 1938 2008-09-10 d1tr9a_ NagZ-like
0047094 317 2008-09-10 d1h09a2 1,4-beta-N-acetylmuraminidase
0047578 316 2008-09-10 d1jfxa_ 1,4-beta-N-acetylmuraminidase
0043588 23 2005-09-08 d1sfsa_ 1,4-beta-N-acetylmuraminidase
0046755 245 2008-09-10 d1fcqa_ Bee venom hyaluronidase
0047766 78 2008-09-10 d1k9da1 alpha-D-glucuronidase/Hyaluronidase catalytic domain
0052168 170 2008-09-10 d2choa2 alpha-D-glucuronidase/Hyaluronidase catalytic domain
0047041 72 2008-09-10 d1gqia1 alpha-D-glucuronidase/Hyaluronidase catalytic domain
0052139 170 2008-09-10 d2cbia2 alpha-D-glucuronidase/Hyaluronidase catalytic domain
0047198 411 2008-09-10 d1hl9a2 Putative alpha-L-fucosidase, catalytic domain
0050870 191 2008-09-10 d1x7fa2 Outer surface protein, N-terminal domain
0051664 247 2008-09-10 d1zy9a2 YicI catalytic domain-like
0052585 2492 2008-09-10 d2f2ha4 YicI catalytic domain-like
0049622 404 2008-09-10 d1tg7a5 Glycosyl hydrolases family 35 catalytic domain
0051737 469 2008-09-10 d2aama1 TM1410-like


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.