SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Xylose isomerase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 19 SUPERFAMILY models representing the Xylose isomerase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051053 381 2008-09-10 d1xp3a1 Endonuclease IV
0049040 751 2008-09-10 d1qtwa_ Endonuclease IV
0046285 1777 2008-09-10 d1d8wa_ L-rhamnose isomerase
0034805 104 2005-09-08 d1a0da_ Xylose isomerase
0052921 755 2008-09-10 d2glka1 Xylose isomerase
0046032 583 2008-09-10 d1bxca_ Xylose isomerase
0045684 1331 2008-09-10 d1a0ca_ Xylose isomerase
0046031 332 2008-09-10 d1bxba_ Xylose isomerase
0050979 395 2008-09-10 d1xima_ Xylose isomerase
0036651 201 2005-09-08 d1dxia_ Xylose isomerase
0049033 1885 2008-09-10 d1qt1a_ Xylose isomerase
0053353 353 2008-09-10 d4xiaa_ Xylose isomerase
0045685 1835 2008-09-10 d1a0ea_ Xylose isomerase
0054562 456 2010-05-31 d2q02a1 IolI-like
0047312 748 2008-09-10 d1i60a_ IolI-like
0052817 515 2008-09-10 d2g0wa1 IolI-like
0047759 1174 2008-09-10 d1k77a_ Hypothetical protein YgbM (EC1530)
0049745 1473 2008-09-10 d1tz9a_ UxuA-like
0051438 101 2008-09-10 d1yx1a1 KguE-like