SUPERFAMILY 1.75 HMM library and genome assignments server

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Bacterial luciferase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Bacterial luciferase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048037 2035 2008-09-10 d1lucb_ Bacterial luciferase (alkanal monooxygenase)
0048036 2632 2008-09-10 d1luca_ Bacterial luciferase (alkanal monooxygenase)
0046866 416 2008-09-10 d1fvpa_ Non-fluorescent flavoprotein (luxF, FP390)
0048354 370 2008-09-10 d1nfpa_ Non-fluorescent flavoprotein (luxF, FP390)
0049163 2907 2008-09-10 d1rhca_ F420 dependent oxidoreductases
0046666 1454 2008-09-10 d1f07a_ F420 dependent oxidoreductases
0046662 2945 2008-09-10 d1ezwa_ F420 dependent oxidoreductases
0048081 2656 2008-09-10 d1m41a_ Ssud-like monoxygenases
0049715 2188 2008-09-10 d1tvla_ Ssud-like monoxygenases