SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PLC-like phosphodiesterases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the PLC-like phosphodiesterases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048917 863 2008-09-10 d1qasa3 Mammalian PLC
0054800 755 2010-05-31 d2zkmx4 Mammalian PLC
0053280 650 2008-09-10 d2ptda_ Bacterial PLC
0053275 475 2008-09-10 d2plca_ Bacterial PLC
0051554 961 2008-09-10 d1zcca1 Glycerophosphoryl diester phosphodiesterase
0050147 1181 2008-09-10 d1vd6a1 Glycerophosphoryl diester phosphodiesterase
0041669 586 2005-09-08 d1o1za_ Glycerophosphoryl diester phosphodiesterase
0049567 2057 2008-09-10 d1t8qa_ Glycerophosphoryl diester phosphodiesterase