SUPERFAMILY 1.75 HMM library and genome assignments server

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Nucleotide-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Nucleotide-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048807 18018 2008-09-10 d1ps9a3 N-terminal domain of adrenodoxin reductase-like
0047141 10966 2008-09-10 d1h7wa4 N-terminal domain of adrenodoxin reductase-like
0048016 1970 2008-09-10 d1lqta2 N-terminal domain of adrenodoxin reductase-like
0046156 3069 2008-09-10 d1cjca2 N-terminal domain of adrenodoxin reductase-like
0036459 4765 2005-09-08 d1djna3 N-terminal domain of adrenodoxin reductase-like
0045795 14926 2008-09-10 d1an9a1 D-aminoacid oxidase, N-terminal domain
0046057 9546 2008-09-10 d1c0pa1 D-aminoacid oxidase, N-terminal domain
0053749 7187 2010-05-31 d2bi7a1 UDP-galactopyranose mutase, N-terminal domain
0047327 10750 2008-09-10 d1i8ta1 UDP-galactopyranose mutase, N-terminal domain