SUPERFAMILY 1.75 HMM library and genome assignments server

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PFL-like glycyl radical enzymes superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the PFL-like glycyl radical enzymes superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046178 325 2008-09-10 d1cm5a_ PFL-like
0049134 336 2008-09-10 d1r9da_ PFL-like
0042277 427 2005-09-08 d1peqa2 R1 subunit of ribonucleotide reductase, C-terminal domain
0043302 426 2005-09-08 d1rlra2 R1 subunit of ribonucleotide reductase, C-terminal domain
0047139 246 2008-09-10 d1h78a_ Class III anaerobic ribonucleotide reductase NRDD subunit
0040352 49 2005-09-08 d1l1la_ B12-dependent (class II) ribonucleotide reductase
0054023 234 2010-05-31 d2ha9a1 SP0239-like