SUPERFAMILY 1.75 HMM library and genome assignments server

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Phosphohistidine domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the Phosphohistidine domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047134 2249 2008-09-10 d1h6za2 Pyruvate phosphate dikinase, central domain
0050126 2157 2008-09-10 d1vbga2 Pyruvate phosphate dikinase, central domain
0047778 2200 2008-09-10 d1kbla2 Pyruvate phosphate dikinase, central domain
0051669 2399 2008-09-10 d1zyma2 N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system