SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

RNI-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the RNI-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052014 14199 2008-09-10 d2bnha_ 28-residue LRR
0048761 309 2008-09-10 d1pgva_ 28-residue LRR
0039098 733 2005-09-08 d1io0a_ 28-residue LRR
0045711 2500 2008-09-10 d1a4ya_ 28-residue LRR
0045099 2413 2005-09-08 d1yrga_ Rna1p (RanGAP1), N-terminal domain
0037738 1581 2005-09-08 d1fqva2 Cyclin A/CDK2-associated p19, Skp2