SUPERFAMILY 1.75 HMM library and genome assignments server

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Uracil-DNA glycosylase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the Uracil-DNA glycosylase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053053 898 2008-09-10 d2hxma1 Uracil-DNA glycosylase
0045509 260 2005-09-08 d3euga_ Uracil-DNA glycosylase
0040441 260 2005-09-08 d1laue_ Uracil-DNA glycosylase
0041892 260 2005-09-08 d1okba_ Uracil-DNA glycosylase
0054202 941 2010-05-31 d2j8xa1 Uracil-DNA glycosylase
0049909 659 2008-09-10 d1ui0a_ Mug-like
0040423 267 2005-09-08 d1l9ga_ Mug-like
0041089 158 2005-09-08 d1muga_ Mug-like
0048547 389 2008-09-10 d1oe4a_ Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
0054565 79 2010-05-31 d2q07a2 AF0587 domain-like