SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Ribosomal protein L4 superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Ribosomal protein L4 superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054178 941 2010-05-31 d2j01f1 Ribosomal protein L4
0036499 313 2005-09-08 d1dmga_ Ribosomal protein L4
0053994 961 2010-05-31 d2gycc1 Ribosomal protein L4
0054774 973 2010-05-31 d2zjrc1 Ribosomal protein L4
0037531 266 2005-09-08 d1ffkc_ Ribosomal protein L4