SUPERFAMILY 1.75 HMM library and genome assignments server

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SGNH hydrolase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 14 SUPERFAMILY models representing the SGNH hydrolase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046617 134 2008-09-10 d1esda_ Esterase
0037646 15 2005-09-08 d1flca2 Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1
0046616 988 2008-09-10 d1es9a_ Acetylhydrolase
0054061 1607 2010-05-31 d2hsja1 Acetylhydrolase
0046880 971 2008-09-10 d1fxwf_ Acetylhydrolase
0036388 148 2005-09-08 d1deoa_ Rhamnogalacturonan acetylesterase
0051447 2093 2008-09-10 d1yzfa1 TAP-like
0047668 1493 2008-09-10 d1jrla_ TAP-like
0050207 1112 2008-09-10 d1vjga_ Hypothetical protein alr1529
0051808 310 2008-09-10 d2apja1 Putative acetylxylan esterase-like
0051596 276 2008-09-10 d1zmba1 Putative acetylxylan esterase-like
0054315 935 2010-05-31 d2o14a2 YxiM C-terminal domain-like
0054858 411 2010-05-31 d3bzwa1 BT2961-like
0054927 701 2010-05-31 d3dc7a1 BT2961-like