SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

DHS-like NAD/FAD-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 25 SUPERFAMILY models representing the DHS-like NAD/FAD-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046339 393 2008-09-10 d1dhsa_ Deoxyhypusine synthase, DHS
0046541 1133 2008-09-10 d1efpa2 C-terminal domain of the electron transfer flavoprotein alpha subunit
0048522 1111 2008-09-10 d1o97d2 C-terminal domain of the electron transfer flavoprotein alpha subunit
0046545 553 2008-09-10 d1efva2 C-terminal domain of the electron transfer flavoprotein alpha subunit
0048895 43 2008-09-10 d1q6za1 Pyruvate oxidase and decarboxylase, middle domain
0048650 1641 2008-09-10 d1ovma1 Pyruvate oxidase and decarboxylase, middle domain
0052102 2387 2008-09-10 d2c31a1 Pyruvate oxidase and decarboxylase, middle domain
0042917 629 2005-09-08 d1qpba1 Pyruvate oxidase and decarboxylase, middle domain
0051605 2373 2008-09-10 d1zpda1 Pyruvate oxidase and decarboxylase, middle domain
0051269 3354 2008-09-10 d1ybha1 Pyruvate oxidase and decarboxylase, middle domain
0044477 881 2005-09-08 d1upaa1 Pyruvate oxidase and decarboxylase, middle domain
0048796 3436 2008-09-10 d1poxa1 Pyruvate oxidase and decarboxylase, middle domain
0052448 2998 2008-09-10 d2djia1 Pyruvate oxidase and decarboxylase, middle domain
0042100 669 2005-09-08 d1ozha1 Pyruvate oxidase and decarboxylase, middle domain
0047672 512 2008-09-10 d1jsca1 Pyruvate oxidase and decarboxylase, middle domain
0036754 604 2005-09-08 d1e3ta_ Transhydrogenase domain III (dIII)
0036270 581 2005-09-08 d1d4oa_ Transhydrogenase domain III (dIII)
0043498 384 2005-09-08 d1s5pa_ Sir2 family of transcriptional regulators
0040861 510 2005-09-08 d1ma3a_ Sir2 family of transcriptional regulators
0047535 1493 2008-09-10 d1j8fa_ Sir2 family of transcriptional regulators
0051273 1543 2008-09-10 d1yc5a1 Sir2 family of transcriptional regulators
0048859 1477 2008-09-10 d1q1aa_ Sir2 family of transcriptional regulators
0053226 1483 2008-09-10 d2nyra1 Sir2 family of transcriptional regulators
0038971 498 2005-09-08 d1icia_ Sir2 family of transcriptional regulators
0051405 47 2008-09-10 d1ytla1 ACDE2-like