SUPERFAMILY 1.75 HMM library and genome assignments server

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Tubulin nucleotide-binding domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the Tubulin nucleotide-binding domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053757 2707 2010-05-31 d2btoa1 Tubulin, GTPase domain
0044122 834 2005-09-08 d1tubb1 Tubulin, GTPase domain
0041832 585 2005-09-08 d1ofua1 Tubulin, GTPase domain
0050371 3911 2008-09-10 d1w5fa1 Tubulin, GTPase domain
0044120 616 2005-09-08 d1tuba1 Tubulin, GTPase domain
0050368 5709 2008-09-10 d1w5ba1 Tubulin, GTPase domain
0043342 473 2005-09-08 d1rq2a1 Tubulin, GTPase domain