SUPERFAMILY 1.75 HMM library and genome assignments server

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Isochorismatase-like hydrolases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Isochorismatase-like hydrolases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045018 229 2005-09-08 d1x9ga_ Isochorismatase-like hydrolases
0039336 604 2005-09-08 d1j2ra_ Isochorismatase-like hydrolases
0041359 507 2005-09-08 d1nf9a_ Isochorismatase-like hydrolases
0039077 685 2005-09-08 d1im5a_ Isochorismatase-like hydrolases
0045069 613 2005-09-08 d1yaca_ Isochorismatase-like hydrolases
0041293 494 2005-09-08 d1nbaa_ Isochorismatase-like hydrolases