SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Subtilisin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 17 SUPERFAMILY models representing the Subtilisin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040900 1256 2005-09-08 d1meea_ Subtilases
0050066 2292 2008-09-10 d1v6ca_ Subtilases
0044989 1125 2005-09-08 d1wmda2 Subtilases
0036139 1246 2005-09-08 d1csee_ Subtilases
0042193 1011 2005-09-08 d1p8ja2 Subtilases
0049659 4670 2008-09-10 d1to2e_ Subtilases
0036867 1231 2005-09-08 d1ea7a_ Subtilases
0044008 1225 2005-09-08 d1thma_ Subtilases
0035548 1250 2005-09-08 d1bh6a_ Subtilases
0042014 1011 2005-09-08 d1ot5a2 Subtilases
0053283 4177 2008-09-10 d2pwaa1 Subtilases
0038041 1228 2005-09-08 d1gcia_ Subtilases
0049119 52 2008-09-10 d1r6va_ Subtilases
0036337 1228 2005-09-08 d1dbia_ Subtilases
0038019 499 2005-09-08 d1ga6a_ Serine-carboxyl proteinase, SCP
0038257 477 2005-09-08 d1gt91_ Serine-carboxyl proteinase, SCP
0043627 456 2005-09-08 d1sioa_ Serine-carboxyl proteinase, SCP