SUPERFAMILY 1.75 HMM library and genome assignments server

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Arginase/deacetylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the Arginase/deacetylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036259 386 2005-09-08 d1d3va_ Arginase-like amidino hydrolases
0051754 1457 2008-09-10 d2aeba1 Arginase-like amidino hydrolases
0045215 387 2005-09-08 d2ceva_ Arginase-like amidino hydrolases
0042422 386 2005-09-08 d1pq3a_ Arginase-like amidino hydrolases
0051675 1407 2008-09-10 d2a0ma1 Arginase-like amidino hydrolases
0044998 378 2005-09-08 d1woha_ Arginase-like amidino hydrolases
0038224 389 2005-09-08 d1gq6a_ Arginase-like amidino hydrolases
0050949 1427 2008-09-10 d1xfka_ Arginase-like amidino hydrolases
0035837 541 2005-09-08 d1c3pa_ Histone deacetylase, HDAC
0054863 2016 2010-05-31 d3c10a1 Histone deacetylase, HDAC
0043894 546 2005-09-08 d1t64a_ Histone deacetylase, HDAC