SUPERFAMILY 1.75 HMM library and genome assignments server

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CoA-dependent acyltransferases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the CoA-dependent acyltransferases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035361 653 2005-09-08 d1b5sa_ CAT-like
0045500 165 2005-09-08 d3claa_ CAT-like
0036871 661 2005-09-08 d1eafa_ CAT-like
0041485 76 2005-09-08 d1nocb_ CAT-like
0049362 2500 2008-09-10 d1scza_ CAT-like
0047935 4564 2008-09-10 d1l5aa1 NRPS condensation domain (amide synthase)
0048911 124 2008-09-10 d1q9ja2 NRPS condensation domain (amide synthase)
0047936 3500 2008-09-10 d1l5aa2 NRPS condensation domain (amide synthase)
0042676 1245 2005-09-08 d1q9ja1 NRPS condensation domain (amide synthase)
0041319 188 2005-09-08 d1ndba2 Choline/Carnitine O-acyltransferase
0042637 188 2005-09-08 d1q6xa2 Choline/Carnitine O-acyltransferase
0051016 507 2008-09-10 d1xl7a2 Choline/Carnitine O-acyltransferase
0041459 187 2005-09-08 d1nm8a2 Choline/Carnitine O-acyltransferase
0041318 204 2005-09-08 d1ndba1 Choline/Carnitine O-acyltransferase
0042636 202 2005-09-08 d1q6xa1 Choline/Carnitine O-acyltransferase
0051015 564 2008-09-10 d1xl7a1 Choline/Carnitine O-acyltransferase
0041458 204 2005-09-08 d1nm8a1 Choline/Carnitine O-acyltransferase