SUPERFAMILY 1.75 HMM library and genome assignments server

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Macro domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Macro domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038333 132 2005-09-08 d1gyta1 Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
0040436 103 2005-09-08 d1lama2 Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
0048378 596 2008-09-10 d1njra_ Macro domain
0038610 304 2005-09-08 d1hjza_ Macro domain
0051619 1033 2008-09-10 d1zr5a1 Macro domain
0043702 304 2005-09-08 d1spva_ Macro domain
0052679 223 2008-09-10 d2fg1a1 Macro domain
0051618 1159 2008-09-10 d1zr3a1 Macro domain
0051745 398 2008-09-10 d2acfa1 Macro domain