SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

ITPase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the ITPase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039945 284 2005-09-08 d1k7ka_ ITPase (Ham1)
0052132 1079 2008-09-10 d2cara1 ITPase (Ham1)
0050260 1077 2008-09-10 d1vp2a_ ITPase (Ham1)
0035385 288 2005-09-08 d1b78a_ ITPase (Ham1)
0044652 289 2005-09-08 d1v7ra_ ITPase (Ham1)
0046645 1257 2008-09-10 d1ex2a_ Maf-like
0051798 1061 2008-09-10 d2amha1 Maf-like
0051656 231 2008-09-10 d1zwya1 YjjX-like
0049765 232 2008-09-10 d1u14a_ YjjX-like
0049799 232 2008-09-10 d1u5wa1 YjjX-like